Showing: sciclonereset
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Sciclone took too long
sciclone written 3 months ago by sm.hashemin60
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Sciclone clonevol integration
clonevol sciclone written 4 months ago by sm.hashemin60 • updated 3 months ago by Chris Miller20k
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Can sciclone handle multiallelic variants?
multiallelic_variants sciclone written 4 months ago by sm.hashemin60 • updated 3 months ago by Chris Miller20k
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sciClone: Multiple alleles at single position
sciclone written 13 months ago by fongchunchan10 • updated 9 months ago by Biostar ♦♦ 20
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SciClone: Which Variant to Which Clone
sciclone genotype written 10 months ago by A Soggy Waffle0 • updated 10 months ago by Chris Miller20k
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How to convert bam-readcount output to BED-VAF format
loh sciclone snp bam-readcount sequencing written 22 months ago by Haitao30 • updated 11 months ago by Ming Tang2.4k
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SciClone Cluster Number
sciclone written 11 months ago by mndavies2860 • updated 11 months ago by Chris Miller20k
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sciClone input LOH
loh sciclone input written 11 months ago by shumaila.sayyab0
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sciClone: usage for inferring tumor clonality
tumor-heterogeneity R sciclone genome written 12 months ago by mp8510 • updated 12 months ago by Chris Miller20k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 16 months ago by mar.ark.parr30 • updated 15 months ago by Chris Miller20k
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The meaning of VAF and LOH in sciclone
sciclone wes vaf loh written 16 months ago by shiyang9340 • updated 16 months ago by Chris Miller20k
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Regions to Exclude and useSexChromosome questions
sciclone written 19 months ago by johnbrown320 • updated 19 months ago by Chris Miller20k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 23 months ago by lyan.liu0 • updated 23 months ago by Chris Miller20k
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SciClone: Extra Cluster When Recreating Figure 3
sciclone written 23 months ago by stephanie.hilz40 • updated 23 months ago by Chris Miller20k
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Sciclone on exome sequencing data
copy number sciclone exome seq written 2.5 years ago by cbst130 • updated 24 months ago by Chris Miller20k
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Question about sciClone example data and test script
sciclone written 2.2 years ago by uki_al20 • updated 2.2 years ago by Nikleotide70
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Clonal Evolution Plot (figure 3d)
sciclone written 2.4 years ago by david.melnekoff10 • updated 2.4 years ago by Chris Miller20k
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Only one cluster in multiple tumor phylogeny samples
R next-gen sciclone snp sequencing written 2.4 years ago by ceruleanivy30 • updated 2.4 years ago by Chris Miller20k
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The plot generated by sciClone
dnacopy wes sciclone written 2.5 years ago by lhaiyan320 • updated 2.5 years ago by Chris Miller20k
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SciClone: How to interpret Coverage vs VAF plots
sciclone coverage sequencing written 2.5 years ago by B. Arman Aksoy1.2k • updated 2.5 years ago by Chris Miller20k
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sciClone annotation file
R sciclone annotation written 2.6 years ago by benng600 • updated 2.6 years ago by Chris Miller20k
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Running sciClone on cell prevalence (CP) data
subclonal-analysis sciclone clonality cancer written 2.6 years ago by marki60 • updated 2.6 years ago by Chris Miller20k
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Help with "sciClone" process and output
subclonality sciclone written 2.7 years ago by venu5.5k • updated 2.7 years ago by Chris Miller20k
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sciClone error for two sample
cna sciclone snv written 3.9 years ago by Lisa20 • updated 3.9 years ago by Chris Miller20k
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sciClone error with analysis
tumor heterogeneity sciclone rna-seq error cancer written 4.3 years ago by cristinam0920 • updated 4.2 years ago by Chris Miller20k
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