Showing: sciclonereset
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Does sciClone work on mouse exome data?
clonevol sciclone written 8 months ago by sm.hashemin60 • updated 8 weeks ago by Chris Miller20k
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SciClone works with 1d clustering, but not 2d?
sciclone written 4 months ago by wisty0 • updated 8 weeks ago by Chris Miller20k
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regions with very different VAF fall into one cluster
sciclone written 4 months ago by sm.hashemin60 • updated 8 weeks ago by Chris Miller20k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 22 months ago by mar.ark.parr30 • updated 5 months ago by aliz06110
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Sciclone took too long
sciclone written 9 months ago by sm.hashemin60
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Sciclone clonevol integration
clonevol sciclone written 10 months ago by sm.hashemin60 • updated 9 months ago by Chris Miller20k
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Can sciclone handle multiallelic variants?
multiallelic_variants sciclone written 10 months ago by sm.hashemin60 • updated 9 months ago by Chris Miller20k
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sciClone: Multiple alleles at single position
sciclone written 19 months ago by fongchunchan10 • updated 15 months ago by Biostar ♦♦ 20
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SciClone: Which Variant to Which Clone
sciclone genotype written 16 months ago by A Soggy Waffle0 • updated 16 months ago by Chris Miller20k
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How to convert bam-readcount output to BED-VAF format
loh sciclone snp bam-readcount sequencing written 2.3 years ago by Haitao30 • updated 17 months ago by Ming Tang2.4k
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SciClone Cluster Number
sciclone written 17 months ago by mndavies2860 • updated 17 months ago by Chris Miller20k
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sciClone input LOH
loh sciclone input written 17 months ago by shumaila.sayyab0
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sciClone: usage for inferring tumor clonality
tumor-heterogeneity R sciclone genome written 18 months ago by mp8510 • updated 18 months ago by Chris Miller20k
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The meaning of VAF and LOH in sciclone
sciclone wes vaf loh written 22 months ago by shiyang9350 • updated 22 months ago by Chris Miller20k
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Regions to Exclude and useSexChromosome questions
sciclone written 2.1 years ago by johnbrown320 • updated 2.1 years ago by Chris Miller20k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 2.4 years ago by lyan.liu0 • updated 2.4 years ago by Chris Miller20k
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SciClone: Extra Cluster When Recreating Figure 3
sciclone written 2.4 years ago by stephanie.hilz40 • updated 2.4 years ago by Chris Miller20k
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Sciclone on exome sequencing data
copy number sciclone exome seq written 3.0 years ago by cbst140 • updated 2.5 years ago by Chris Miller20k
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Question about sciClone example data and test script
sciclone written 2.7 years ago by uki_al40 • updated 2.7 years ago by Nikleotide70
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Clonal Evolution Plot (figure 3d)
sciclone written 2.8 years ago by david.melnekoff10 • updated 2.8 years ago by Chris Miller20k
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Only one cluster in multiple tumor phylogeny samples
R next-gen sciclone snp sequencing written 2.9 years ago by ceruleanivy30 • updated 2.9 years ago by Chris Miller20k
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The plot generated by sciClone
dnacopy wes sciclone written 3.0 years ago by lhaiyan320 • updated 3.0 years ago by Chris Miller20k
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SciClone: How to interpret Coverage vs VAF plots
sciclone coverage sequencing written 3.0 years ago by B. Arman Aksoy1.2k • updated 3.0 years ago by Chris Miller20k
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sciClone annotation file
R sciclone annotation written 3.1 years ago by benng600 • updated 3.1 years ago by Chris Miller20k
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Running sciClone on cell prevalence (CP) data
subclonal-analysis sciclone clonality cancer written 3.1 years ago by marki60 • updated 3.1 years ago by Chris Miller20k
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Help with "sciClone" process and output
subclonality sciclone written 3.2 years ago by venu6.0k • updated 3.2 years ago by Chris Miller20k
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