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Sciclone cluster all around y=x
sciclone written 4 days ago by April0 • updated 4 days ago by RamRS26k
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SciClone: Which Variant to Which Clone
sciclone genotype written 2.4 years ago by A Soggy Waffle0 • updated 9 months ago by Biostar ♦♦ 20
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Does sciClone work on mouse exome data?
clonevol sciclone written 20 months ago by sm.hashemin90 • updated 9 months ago by Biostar ♦♦ 20
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Data source for SciClone
genome sciclone rna-seq written 12 months ago by shawnmhy0
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SciClone works with 1d clustering, but not 2d?
sciclone written 16 months ago by wisty0 • updated 14 months ago by Chris Miller21k
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regions with very different VAF fall into one cluster
sciclone written 17 months ago by sm.hashemin90 • updated 14 months ago by Chris Miller21k
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SciClone on WES data
dnacopy varscan clonality wes sciclone written 2.9 years ago by mar.ark.parr40 • updated 18 months ago by aliz06110
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Sciclone took too long
sciclone written 22 months ago by sm.hashemin90
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Sciclone clonevol integration
clonevol sciclone written 22 months ago by sm.hashemin90 • updated 22 months ago by Chris Miller21k
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Can sciclone handle multiallelic variants?
multiallelic_variants sciclone written 22 months ago by sm.hashemin90 • updated 22 months ago by Chris Miller21k
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sciClone: Multiple alleles at single position
sciclone written 2.6 years ago by fongchunchan10 • updated 2.3 years ago by Biostar ♦♦ 20
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How to convert bam-readcount output to BED-VAF format
loh sciclone snp bam-readcount sequencing written 3.4 years ago by Haitao30 • updated 2.5 years ago by Ming Tang2.6k
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SciClone Cluster Number
sciclone written 2.5 years ago by mndavies2860 • updated 2.5 years ago by Chris Miller21k
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sciClone input LOH
loh sciclone input written 2.5 years ago by shumaila.sayyab0
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sciClone: usage for inferring tumor clonality
tumor-heterogeneity R sciclone genome written 2.5 years ago by mp8510 • updated 2.5 years ago by Chris Miller21k
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The meaning of VAF and LOH in sciclone
sciclone wes vaf loh written 2.9 years ago by shiyang9350 • updated 2.9 years ago by Chris Miller21k
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Regions to Exclude and useSexChromosome questions
sciclone written 3.2 years ago by johnbrown320 • updated 3.1 years ago by Chris Miller21k
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sciClone:input data wrong
dnacopy varscan copy number sciclone cluster written 3.4 years ago by lyan.liu0 • updated 3.4 years ago by Chris Miller21k
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SciClone: Extra Cluster When Recreating Figure 3
sciclone written 3.5 years ago by stephanie.hilz40 • updated 3.5 years ago by Chris Miller21k
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Sciclone on exome sequencing data
copy number sciclone exome seq written 4.0 years ago by cbst150 • updated 3.5 years ago by Chris Miller21k
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Question about sciClone example data and test script
sciclone written 3.7 years ago by uki_al50 • updated 3.7 years ago by Nikleotide100
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Clonal Evolution Plot (figure 3d)
sciclone written 3.9 years ago by david.melnekoff10 • updated 3.9 years ago by Chris Miller21k
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Only one cluster in multiple tumor phylogeny samples
R next-gen sciclone snp sequencing written 3.9 years ago by ceruleanivy30 • updated 3.9 years ago by Chris Miller21k
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The plot generated by sciClone
dnacopy wes sciclone written 4.1 years ago by lhaiyan330 • updated 4.1 years ago by Chris Miller21k
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SciClone: How to interpret Coverage vs VAF plots
sciclone coverage sequencing written 4.1 years ago by B. Arman Aksoy1.2k • updated 4.1 years ago by Chris Miller21k
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