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Calculate heterozygosity for each SNPs in the bim file.

snp-chip snp written 10 days ago by mostafarafiepour • 60

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PennCNV-Affy cluster generation for chrX/chrY in gender-specific cancer types

snp-chip affy6.0 copynumber genotype written 3.4 years ago by Charles Warden ♦ 5.9k • updated 2.6 years ago by Biostar ♦♦ 20

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Recent Replies

C: GenBank features don't extract sequences based on condition Biopython by jrj.healey ♦ 9.7k
Each of the features corresponding to a 16S or 23S rRNA is contained within the list `s`. Do you ...
C: Gene coverage from Bam files by David • 120
Thanks, Indeed the following command did work: > bedtools coverage -hist -b 1.mapped.bam.sor...
C: How to combine a multi sample VCF from multiple sample VCF and interpret a multi by S AR • 50
command not working!
C: GenBank features don't extract sequences based on condition Biopython by Shred • 100
Ouh, you're damn close to the solution. I've tested your code, by changing `xrange` with `range` ...
A: group samples based on shared mutations in a single multi samples vcf file by Pierre Lindenbaum ♦ 116k
using bioalcidaejdk: http://lindenb.github.io/jvarkit/BioAlcidaeJdk.html java -jar dist/bi...
A: Gene coverage from Bam files by finswimmer ♦ 8.9k
Hello, you have to use the `bed` file for the `-a` parameter and the `bam` file for the `-b` par...
C: how to convert a fasta file to a PAML input file (nuc format) ? by jrj.healey ♦ 9.7k
What have you attempted so far?
A: How to combine a multi sample VCF from multiple sample VCF? by Raony Guimarães • 950
You could merge the files with bcftools: bcftools merge -O z -o merged.vcf.gz sample1.vcf.gz sam...
C: Comparing Multiple Species RNA seq data by Lmira zand • 0
Thank you, Johnson, I will check these papers. You are right I must get those genes first.
C: Comparing Multiple Species RNA seq data by Lmira zand • 0
Thank you so much I will try your suggestion and start with identifying paralogous and orthologou...
C: De-duplicate UMI at FASTQ level by i.sudbery ♦ 3.1k
I'm not sure I understand what you mean by "UMI which will be actually inflated than the usual nu...
A: group samples based on shared mutations in a single multi samples vcf file by finswimmer ♦ 8.9k
I dont't know if this is exactly what you want. For each genotype you are interested run this: ...

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