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Calculate heterozygosity for each SNPs in the bim file.

snp-chip snp written 3 months ago by mostafarafiepour • 60

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PennCNV-Affy cluster generation for chrX/chrY in gender-specific cancer types

snp-chip affy6.0 copynumber genotype written 3.6 years ago by Charles Warden ♦ 6.5k • updated 2.8 years ago by Biostar ♦♦ 20

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Recent Replies

C: LogFC calculation in multiple comparisons by swbarnes2 ♦ 5.2k
Well, don't just look at the fold changes, look at the p-values too! Also, see the lfcshrink func...
C: Export File Error In R ? by Pluto • 0
SURE I created one named file
C: Export File Error In R ? by Asaf ♦ 5.5k
is `file` defined?
C: fast-dump of 10x genomics SRA data by linjc.xmu • 10
I think seq ID should be equal for one cell barcode/UMI and one sequence in read 2. Is there any ...
C: Cufflinks takes too long time on my PC by scheme4193 • 0
Thank you so much ! I'll try it
C: fast-dump of 10x genomics SRA data by genomax ♦ 65k
The shorter reads are cell barcodes/UMI and longer reads as actual sequence data. That said ENA ...
C: How to filter sequencing reads in a fastq file by size? by Beginner • 0
I tried it and it worked. Thank you for your help!
C: On the practical use of estimateDisp function by Kevin Blighe ♦ 41k
I would ask this on Bioconductor support forum.
C: Specific Antibodies for ChiP-Seq assay by morteza.khabiri • 20
Many thanks @Friederike and @ATpoint. @Atpoint, how do you test if tag perturbing the binding of...
A: ClustalO computing suboptimal alignment by mschmid • 90
I tried MUSCLE and it seems to do a much better job.
C: ClustalO computing suboptimal alignment by mschmid • 90
Yes, MUSCLE seems to do a much better job for my application. Strange though....
A: Multiple testing correction issue by swbarnes2 ♦ 5.2k
Maybe this will help illustrate the issue https://xkcd.com/882/

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