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5
votes
1
answer
184
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1
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Get the top X number of lines per unique value in one column, once you've sorted a text file using 'sort'
bash shell sort written 23 days ago by niccolo.alfano • 0 • updated 23 days ago by GenoMax ♦ 95k
6
votes
1
answer
167
views
6 follow
1
answer
How to sort blast results by a minimum % of identical matches?
blast output identical matches sort written 10 weeks ago by Audrey • 30 • updated 10 weeks ago by Michael Dondrup ♦ 48k
1
vote
0
answers
278
views
0
answers
Error while attempting to create a VennDiagram with bcftools stats
venndiagram bcftools sort written 5 months ago by caro-ca • 20 • updated 3 months ago by Biostar ♦♦ 20
1
vote
1
answer
224
views
1
answer
Decreasing only numeric columns (more than one) in a dataframe with character and numeric column
R sort rna-seq decreasing written 5 months ago by camillab. • 30 • updated 5 months ago by _r_am ♦ 32k
2
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0
answers
410
views
0
answers
Tutorial: Sorting GFF/GTF files
gtf gff sort annotation forum tutorial written 6 months ago by Juke34 • 5.0k
3
votes
1
answer
431
views
1
answer
sambamba-sort: Error reading BGZF with BAM file
software error sort sambamba written 8 months ago by marongiu.luigi • 520 • updated 8 months ago by ATpoint ♦ 44k
4
votes
1
answer
251
views
1
answer
sorting for bedtools genomecov doesn't work properly
bedtools bedpe sort rna-seq bedgraph written 10 months ago by Assa Yeroslaviz • 1.4k • updated 10 months ago by Kevin Blighe ♦ 69k
30
votes
2
answers
63k
views
11 follow
2
answers
samtools sorting and indexing
index samtools sort written 3.6 years ago by ggman • 80 • updated 12 months ago by onestop_data • 250
0
votes
0
answers
210
views
0
answers
How to get unique counts saved in a file
linux awk unique counts sort written 13 months ago by kittys • 0 • updated 13 months ago by GenoMax ♦ 95k
5
votes
2
answers
699
views
5 follow
2
answers
Linux sort P-values with scientific notation
pvalue sort scientific notation written 14 months ago by Shicheng Guo • 8.5k • updated 14 months ago by zx8754 ♦ 9.9k
5
votes
1
answer
400
views
1
answer
How to get chrM chr1 ...chr22 chrX chrY order in my bam file
gatk picard snp bam sort written 15 months ago by Ada • 0 • updated 15 months ago by jkbonfield • 470
2
votes
1
answer
635
views
1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 19 months ago by dami • 10 • updated 15 months ago by kaushik.ghose • 70
1
vote
1
answer
364
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5 follow
1
answer
Pipe pysam.view() output to pysam.sort()
python sam alignment pysam sort written 15 months ago by Macspider • 3.3k • updated 15 months ago by gb • 1.9k
3
votes
1
answer
352
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1
answer
How can I get this sorted by ascending order? (when the number and character is together)
sort written 18 months ago by woojoy14 • 0 • updated 18 months ago by Chris Miller ♦ 21k
21
votes
2
answers
2.5k
views
5 follow
2
answers
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 2.3 years ago by Charlotte.Herzeel • 140
4
votes
0
answers
554
views
6 follow
0
answers
How to sort sam file using shell script?
sam file forum samtools sort written 20 months ago by gerrybio2010 • 0 • updated 20 months ago by Bastien Hervé ♦ 4.9k
0
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1
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1.4k
views
1
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bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
bowtie2 alignment samtools sort written 21 months ago by dongchenchen • 10 • updated 21 months ago by h.mon ♦ 32k
1
vote
1
answer
459
views
1
answer
Interpro results analysis
column sort written 23 months ago by ksenia.jravel • 0
3
votes
0
answers
843
views
0
answers
CD-HIT results without sorting by length
length cd-hit clustering sort written 2.1 years ago by Anand Rao • 350
42
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8
answers
17k
views
19 follow
8
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 5.7 years ago by oliver.bayfield • 160 • updated 2.2 years ago by michau • 50
4
votes
1
answer
1.0k
views
1
answer
samtools sort: legacy usage
genome metagenomics samtools sort written 2.2 years ago by c.e.chong • 40 • updated 2.2 years ago by h.mon ♦ 32k
3
votes
1
answer
549
views
1
answer
Significant Difference of the File Size between csorted and nsorted BAM file
compress nsort samtools sort csort sort written 2.4 years ago by Shicheng Guo • 8.5k • updated 2.3 years ago by Biostar ♦♦ 20
5
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1
answer
1.7k
views
1
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should FASTA files be sorted before indexed with SAMtools?
fasta sort samtools index written 2.3 years ago by Makplus T • 70 • updated 2.3 years ago by finswimmer ♦ 14k
1
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2
answers
3.3k
views
2
answers
Calculating Average Amino Acid Identity (AAI) using CompareM
sort ani checkm comparem aai written 2.9 years ago by charles.bridges • 70
3
votes
1
answer
1.0k
views
1
answer
sorting a BAM file
bam sort written 2.5 years ago by Bogdan • 1.1k • updated 2.5 years ago by Philipp Bayer ♦ 6.9k
2
votes
0
answers
702
views
0
answers
sort the homo sapiens genes by chromosome with Unix command lines
gene sort written 2.6 years ago by Huichen03 • 20
1
vote
1
answer
672
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1
answer
Issue while sorting a file
inconsistency trouble sort written 2.7 years ago by ricfoz • 30 • updated 2.7 years ago by drkennetz • 510
4
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1
answer
5.4k
views
1
answer
Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 6.3 years ago by axelwilhelm • 100 • updated 2.7 years ago by Biostar ♦♦ 20
3
votes
1
answer
2.1k
views
1
answer
Samtools sort error with a bam file
bam samtools rna-seq sort written 2.8 years ago by Vasu • 510 • updated 2.8 years ago by Devon Ryan ♦ 98k
2
votes
1
answer
1.3k
views
1
answer
How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
barcode header interleaved fastq sort written 2.9 years ago by guillepalou4 • 10 • updated 2.9 years ago by Pierre Lindenbaum ♦ 133k
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