Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: sort • reset
or   Classic search
<prev • 76 results • page 1 of 3 • next >
3
votes
1
answer
87
views
1
answer
How can I get this sorted by ascending order? (when the number and character is together)
sort written 4 weeks ago by woojoy14 • 0 • updated 4 weeks ago by Chris Miller ♦ 21k
0
votes
0
answers
207
views
0
answers
bedtools sort -faidx in CWL
bedtools cwl sort written 10 weeks ago by dami • 0
21
votes
2
answers
1.2k
views
5 follow
2
answers
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 10 months ago by Charlotte.Herzeel • 140
4
votes
0
answers
193
views
6 follow
0
answers
How to sort sam file using shell script?
sam file forum samtools sort written 3 months ago by gerrybio2010 • 0 • updated 3 months ago by Bastien Hervé ♦ 4.4k
0
votes
1
answer
247
views
1
answer
bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
bowtie2 alignment samtools sort written 4 months ago by dongchenchen • 10 • updated 4 months ago by h.mon ♦ 26k
1
vote
1
answer
206
views
1
answer
Interpro results analysis
column sort written 6 months ago by ksenia.jravel • 0
3
votes
0
answers
374
views
0
answers
CD-HIT results without sorting by length
length cd-hit clustering sort written 7 months ago by Anand Rao • 210
30
votes
7
answers
11k
views
13 follow
7
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 4.2 years ago by oliver.bayfield • 120 • updated 9 months ago by michau • 20
4
votes
1
answer
397
views
1
answer
samtools sort: legacy usage
genome metagenomics samtools sort written 9 months ago by c.e.chong • 10 • updated 9 months ago by h.mon ♦ 26k
3
votes
1
answer
362
views
1
answer
Significant Difference of the File Size between csorted and nsorted BAM file
compress nsort samtools sort csort sort written 12 months ago by Shicheng Guo • 7.7k • updated 9 months ago by Biostar ♦♦ 20
5
votes
1
answer
424
views
1
answer
should FASTA files be sorted before indexed with SAMtools?
fasta sort samtools index written 10 months ago by Timze W • 20 • updated 10 months ago by finswimmer ♦ 12k
1
vote
2
answers
1.6k
views
2
answers
Calculating Average Amino Acid Identity (AAI) using CompareM
sort ani checkm comparem aai written 17 months ago by charles.bridges • 70
3
votes
1
answer
476
views
1
answer
sorting a BAM file
bam sort written 13 months ago by Bogdan • 850 • updated 13 months ago by Philipp Bayer ♦ 6.4k
2
votes
0
answers
398
views
0
answers
sort the homo sapiens genes by chromosome with Unix command lines
gene sort written 14 months ago by Huichen03 • 10
1
vote
1
answer
464
views
1
answer
Issue while sorting a file
inconsistency trouble sort written 14 months ago by ricfoz • 30 • updated 14 months ago by drkennetz • 380
4
votes
1
answer
4.2k
views
1
answer
Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 4.9 years ago by axelwilhelm • 100 • updated 15 months ago by Biostar ♦♦ 20
3
votes
1
answer
1.1k
views
1
answer
Samtools sort error with a bam file
bam samtools rna-seq sort written 16 months ago by Vasu • 340 • updated 16 months ago by Devon Ryan ♦ 91k
2
votes
1
answer
739
views
1
answer
How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
barcode header interleaved fastq sort written 17 months ago by guillepalou4 • 0 • updated 17 months ago by Pierre Lindenbaum ♦ 122k
7
votes
1
answer
828
views
1
answer
Sorting my .bam with samtools produces differences in the fastq files generated afterwards
fastq next-gen samtools bam sort written 17 months ago by guillepalou4 • 0 • updated 17 months ago by Devon Ryan ♦ 91k
2
votes
0
answers
517
views
0
answers
Sorting file by column, with missing values
sort glimmer awk written 18 months ago by oars • 160
2
votes
1
answer
1.7k
views
1
answer
How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 20 months ago by anc.informatics • 0 • updated 20 months ago by finswimmer ♦ 12k
4
votes
1
answer
3.3k
views
1
answer
Samtools view command, Exec format error while trying to view a human chromosome region
exec format error region view samtools sort written 21 months ago by ricfoz • 30 • updated 21 months ago by Hussain Ather • 940
4
votes
3
answers
821
views
5 follow
3
answers
unique list based on multiple column
awk sort written 21 months ago by Sam • 120 • updated 21 months ago by aka001 • 190
4
votes
1
answer
1.2k
views
1
answer
featuresCount order sam file?
gtf featurescount rna-seq sort written 2.1 years ago by noeD • 70 • updated 2.1 years ago by h.mon ♦ 26k
2
votes
0
answers
1.2k
views
0
answers
samtools sort stuck during merging
next-gen samtools bamtools sort written 2.1 years ago by Carlo Yague • 4.6k
25
votes
1
answer
39k
views
8 follow
1
answer
samtools sorting and indexing
index samtools sort written 2.1 years ago by ggman • 80 • updated 2.1 years ago by John ♦ 12k
1
vote
0
answers
892
views
0
answers
sorting bowtie2 results using samtools sort
bowtie2 samtools sort written 2.1 years ago by ggman • 80
36
votes
8
answers
24k
views
11 follow
8
answers
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 7.4 years ago by Rm ♦ 7.9k • updated 2.2 years ago by cmdcolin • 1.2k
8
votes
1
answer
1.2k
views
1
answer
Samtools sorting by read names vs. chromosomal coordinates
alignment samtools sort written 2.2 years ago by ropolocan • 580
3
votes
3
answers
1.7k
views
5 follow
3
answers
Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 2.7 years ago by yarmda • 0 • updated 2.3 years ago by Eichan • 10
<prev • 76 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • United States, 3 minutes ago
  • Poland - Warsaw - SGGW/WULS, 4 minutes ago
  • United Kingdom, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1575 users visited in the last hour