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3
votes
1
answer
134
views
1
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Samtools sort error with a bam file
bam samtools rna-seq sort written 4 weeks ago by Bioinfo • 170 • updated 4 weeks ago by Devon Ryan ♦ 78k
2
votes
1
answer
137
views
1
answer
How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
barcode header interleaved fastq sort written 6 weeks ago by guillepalou4 • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 106k
0
votes
0
answers
158
views
0
answers
Calculating Average Amino Acid Identity (AAI) using CompareM
sort ani checkm comparem aai written 6 weeks ago by charles.bridges • 60
5
votes
1
answer
193
views
1
answer
Sorting my .bam with samtools produces differences in the fastq files generated afterwards
fastq next-gen samtools bam sort written 6 weeks ago by guillepalou4 • 0 • updated 6 weeks ago by Devon Ryan ♦ 78k
2
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0
answers
175
views
0
answers
Sorting file by column, with missing values
sort glimmer awk written 10 weeks ago by oars • 80
2
votes
1
answer
418
views
1
answer
How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 4 months ago by anc.informatics • 0 • updated 4 months ago by finswimmer • 1.5k
4
votes
1
answer
637
views
1
answer
Samtools view command, Exec format error while trying to view a human chromosome region
exec format error region view samtools sort written 5 months ago by ricfoz • 20 • updated 5 months ago by Hussain Ather • 820
4
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3
answers
389
views
5 follow
3
answers
unique list based on multiple column
awk sort written 5 months ago by Sam • 50 • updated 5 months ago by aka001 • 180
4
votes
1
answer
515
views
1
answer
featuresCount order sam file?
gtf featurescount rna-seq sort written 9 months ago by noeD • 70 • updated 9 months ago by h.mon ♦ 13k
2
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0
answers
531
views
0
answers
samtools sort stuck during merging
next-gen samtools bamtools sort written 9 months ago by Carlo Yague • 3.9k
13
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1
answer
9.2k
views
1
answer
samtools sorting and indexing
index samtools sort written 9 months ago by ggman • 40 • updated 9 months ago by John ♦ 12k
1
vote
0
answers
342
views
0
answers
sorting bowtie2 results using samtools sort
bowtie2 samtools sort written 10 months ago by ggman • 40
34
votes
8
answers
20k
views
10 follow
8
answers
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 6.1 years ago by Rm ♦ 7.6k • updated 10 months ago by cmdcolin • 760
6
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1
answer
392
views
1
answer
Samtools sorting by read names vs. chromosomal coordinates
alignment samtools sort written 10 months ago by ropolocan • 400
3
votes
3
answers
939
views
5 follow
3
answers
Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 16 months ago by yarmda • 0 • updated 11 months ago by Eichan • 10
75
votes
5
answers
40k
views
20 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 7.2 years ago by Pierre Lindenbaum ♦ 106k • updated 12 months ago by martin.triska • 60
18
votes
6
answers
6.6k
views
8 follow
6
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 2.9 years ago by oliver.bayfield • 100 • updated 14 months ago by Eslam Samir • 90
1
vote
1
answer
586
views
1
answer
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 15 months ago by beausoleilmo • 180 • updated 15 months ago by chrchang523 ♦ 3.1k
0
votes
0
answers
492
views
0
answers
Allele frequencies sorted IGV visualisation
allele frequency igv af sort written 16 months ago by Palani Kannan • 30
5
votes
0
answers
842
views
0
answers
Sort fastq file by coordinate
fastq alignment bam sort written 18 months ago by Beñat • 20 • updated 16 months ago by Biostar ♦♦ 20
9
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4
answers
1.5k
views
4
answers
Script to sort bam file not working
bam samtools unix blast sort written 17 months ago by emth4657 • 10 • updated 17 months ago by Santosh Anand • 3.4k
3
votes
2
answers
738
views
2
answers
Custom sam sort
bam sam rna-seq sort written 20 months ago by thomas.smith2 • 90
0
votes
1
answer
637
views
1
answer
a problem when ran vcf-sort
vcf dict sort written 20 months ago by zengtony743 • 70
2
votes
1
answer
623
views
1
answer
Samtools Sort Error
bam samtools sort written 21 months ago by Valeria • 10
7
votes
1
answer
840
views
1
answer
How to sort chromosome name in bed file
bedfile chrmosome sort written 22 months ago by raya.girish • 20 • updated 22 months ago by genomax ♦ 46k
16
votes
1
answer
1.2k
views
1
answer
Bedtools sortBed | uniq and bash sort | uniq returns different number of lines
bedtools bed sort uniq bash written 22 months ago by QVINTVS_FABIVS_MAXIMVS • 2.0k • updated 22 months ago by ATpoint • 3.5k
7
votes
0
answers
1.7k
views
0
answers
Tutorial: bedGraphToBigWig Tutorial and Report
expecting tutorial bedgraphtobigwig error sort written 2.2 years ago by Shicheng Guo • 4.7k
16
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3
answers
6.5k
views
6 follow
3
answers
Is the Picard SortSam queryname or coordinate equivalent to samtools sort -n?
picard samtools sort written 3.9 years ago by jon.brate • 150 • updated 2.1 years ago by John ♦ 12k
3
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1
answer
1.2k
views
1
answer
Sorted vs unsorted SAM/BAM
bam samtools sam sort written 2.1 years ago by ofonov • 10 • updated 2.1 years ago by mastal511 • 1.8k
1
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0
answers
929
views
0
answers
How to sort fastq.gz files efficiently
fastq.gz sort written 2.1 years ago by komal.rathi • 3.1k
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