Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: sort • reset
or   Classic search
<prev • 71 results • page 1 of 3 • next >
3
votes
0
answers
148
views
0
answers
CD-HIT results without sorting by length
length cd-hit clustering sort written 18 days ago by Anand Rao • 190
19
votes
1
answer
745
views
1
answer
Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 12 weeks ago by Charlotte.Herzeel • 130
24
votes
7
answers
8.8k
views
10 follow
7
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 3.7 years ago by oliver.bayfield • 110 • updated 8 weeks ago by michau • 10
4
votes
1
answer
210
views
1
answer
samtools sort: legacy usage
genome metagenomics samtools sort written 10 weeks ago by c.e.chong • 0 • updated 10 weeks ago by h.mon ♦ 22k
3
votes
1
answer
238
views
1
answer
Significant Difference of the File Size between csorted and nsorted BAM file
compress nsort samtools sort csort sort written 5 months ago by Shicheng Guo • 7.3k • updated 12 weeks ago by Biostar ♦♦ 20
5
votes
1
answer
157
views
1
answer
should FASTA files be sorted before indexed with SAMtools?
fasta sort samtools index written 3 months ago by Timze W • 20 • updated 3 months ago by finswimmer ♦ 8.9k
1
vote
2
answers
968
views
2
answers
Calculating Average Amino Acid Identity (AAI) using CompareM
sort ani checkm comparem aai written 10 months ago by charles.bridges • 70
3
votes
1
answer
293
views
1
answer
sorting a BAM file
bam sort written 5 months ago by Bogdan • 690 • updated 5 months ago by Philipp Bayer ♦ 5.9k
2
votes
0
answers
239
views
0
answers
sort the homo sapiens genes by chromosome with Unix command lines
gene sort written 7 months ago by Huichen03 • 10
1
vote
1
answer
336
views
1
answer
Issue while sorting a file
inconsistency trouble sort written 7 months ago by ricfoz • 20 • updated 7 months ago by drkennetz • 360
4
votes
1
answer
3.7k
views
1
answer
Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 4.3 years ago by axelwilhelm • 100 • updated 8 months ago by Biostar ♦♦ 20
3
votes
1
answer
623
views
1
answer
Samtools sort error with a bam file
bam samtools rna-seq sort written 9 months ago by Bioinfo • 270 • updated 9 months ago by Devon Ryan ♦ 87k
2
votes
1
answer
473
views
1
answer
How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
barcode header interleaved fastq sort written 10 months ago by guillepalou4 • 0 • updated 10 months ago by Pierre Lindenbaum ♦ 116k
5
votes
1
answer
521
views
1
answer
Sorting my .bam with samtools produces differences in the fastq files generated afterwards
fastq next-gen samtools bam sort written 10 months ago by guillepalou4 • 0 • updated 10 months ago by Devon Ryan ♦ 87k
2
votes
0
answers
365
views
0
answers
Sorting file by column, with missing values
sort glimmer awk written 11 months ago by oars • 150
2
votes
1
answer
1.1k
views
1
answer
How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 13 months ago by anc.informatics • 0 • updated 13 months ago by finswimmer ♦ 8.9k
4
votes
1
answer
2.2k
views
1
answer
Samtools view command, Exec format error while trying to view a human chromosome region
exec format error region view samtools sort written 14 months ago by ricfoz • 20 • updated 14 months ago by Hussain Ather • 890
4
votes
3
answers
686
views
5 follow
3
answers
unique list based on multiple column
awk sort written 14 months ago by Sam • 80 • updated 14 months ago by aka001 • 180
4
votes
1
answer
855
views
1
answer
featuresCount order sam file?
gtf featurescount rna-seq sort written 17 months ago by noeD • 70 • updated 17 months ago by h.mon ♦ 22k
2
votes
0
answers
944
views
0
answers
samtools sort stuck during merging
next-gen samtools bamtools sort written 18 months ago by Carlo Yague • 4.4k
22
votes
1
answer
26k
views
8 follow
1
answer
samtools sorting and indexing
index samtools sort written 18 months ago by ggman • 70 • updated 18 months ago by John ♦ 12k
1
vote
0
answers
649
views
0
answers
sorting bowtie2 results using samtools sort
bowtie2 samtools sort written 18 months ago by ggman • 70
36
votes
8
answers
22k
views
11 follow
8
answers
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 6.8 years ago by Rm ♦ 7.8k • updated 19 months ago by cmdcolin • 1.0k
6
votes
1
answer
836
views
1
answer
Samtools sorting by read names vs. chromosomal coordinates
alignment samtools sort written 19 months ago by ropolocan • 500
3
votes
3
answers
1.4k
views
5 follow
3
answers
Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 2.1 years ago by yarmda • 0 • updated 20 months ago by Eichan • 10
84
votes
5
answers
44k
views
25 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 8.0 years ago by Pierre Lindenbaum ♦ 116k • updated 21 months ago by martin.triska • 100
1
vote
1
answer
942
views
1
answer
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
bed vcftools plink ped sort written 24 months ago by beausoleilmo • 230 • updated 24 months ago by chrchang523 ♦ 4.3k
0
votes
0
answers
686
views
0
answers
Allele frequencies sorted IGV visualisation
allele frequency igv af sort written 2.1 years ago by Palani Kannan • 60
5
votes
0
answers
1.2k
views
0
answers
Sort fastq file by coordinate
fastq alignment bam sort written 2.3 years ago by Beñat • 20 • updated 2.1 years ago by Biostar ♦♦ 20
10
votes
4
answers
2.5k
views
4
answers
Script to sort bam file not working
bam samtools unix blast sort written 2.2 years ago by emth4657 • 10 • updated 2.2 years ago by Santosh Anand ♦ 4.4k
<prev • 71 results • page 1 of 3 • next >
Recent Votes
Recent Locations • All »
  • VIB, Ghent, Belgium, just now
  • Germany, 1 minute ago
  • India, 1 minute ago
  • Switzerland,Zurich, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1724 users visited in the last hour