Showing: sortreset
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4
votes
1
answer
251
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1
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featuresCount order sam file?
gtf featurescount rna-seq sort written 8 weeks ago by noeD60 • updated 8 weeks ago by h.mon8.7k
2
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0
answers
168
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0
answers
9
votes
1
answer
455
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1
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samtools sorting and indexing
index samtools sort written 12 weeks ago by ggman40 • updated 12 weeks ago by John11k
1
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0
answers
181
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0
answers
32
votes
8
answers
18k
views
10 follow
8
answers
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.5 years ago by Rm7.5k • updated 3 months ago by cmdcolin680
6
votes
1
answer
169
views
1
answer
3
votes
3
answers
561
views
5 follow
3
answers
Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 9 months ago by yarmda0 • updated 4 months ago by Eichan10
72
votes
5
answers
37k
views
19 follow
5
answers
Is My Bam File Sorted ?
sequencing next-gen bam sort written 6.6 years ago by Pierre Lindenbaum98k • updated 5 months ago by martin.triska40
17
votes
6
answers
5.2k
views
8 follow
6
answers
Remove duplicates in fasta file based on ID
fasta sed sort written 2.3 years ago by oliver.bayfield90 • updated 7 months ago by Eslam Samir90
1
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1
answer
373
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1
answer
0
votes
0
answers
331
views
0
answers
5
votes
0
answers
583
views
0
answers
Sort fastq file by coordinate
fastq alignment bam sort written 11 months ago by BeƱat20 • updated 9 months ago by Biostar ♦♦ 20
9
votes
4
answers
707
views
4
answers
Script to sort bam file not working
bam samtools unix blast sort written 10 months ago by emth465710 • updated 10 months ago by Santosh Anand2.9k
3
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2
answers
566
views
2
answers
Custom sam sort
bam sam rna-seq sort written 13 months ago by thomas.smith280
0
votes
1
answer
408
views
1
answer
a problem when ran vcf-sort
vcf dict sort written 13 months ago by zengtony74360
2
votes
1
answer
436
views
1
answer
Samtools Sort Error
bam samtools sort written 14 months ago by Valeria10
7
votes
1
answer
525
views
1
answer
How to sort chromosome name in bed file
bedfile chrmosome sort written 14 months ago by raya.girish20 • updated 14 months ago by genomax33k
16
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1
answer
896
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1
answer
6
votes
0
answers
1.3k
views
0
answers
16
votes
3
answers
5.2k
views
6 follow
3
answers
Is the Picard SortSam queryname or coordinate equivalent to samtools sort -n?
picard samtools sort written 3.3 years ago by jon.brate130 • updated 18 months ago by John11k
3
votes
1
answer
845
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1
answer
Sorted vs unsorted SAM/BAM
bam samtools sam sort written 18 months ago by ofonov10 • updated 18 months ago by mastal5111.7k
1
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0
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640
views
0
answers
5
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2
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1.6k
views
2
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RNA-Seq Analysis: To sort or not to Sort?
htseq myposts sam rna-seq sort written 22 months ago by kanika.15150 • updated 22 months ago by h.mon8.7k
3
votes
1
answer
636
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1
answer
Joining two files with multiple columns
perl grep awk join sort written 23 months ago by vharshavardhanan30 • updated 23 months ago by michael.ante1.6k
6
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4
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1.0k
views
4
answers
9
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2
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1.4k
views
2
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coverage bed error but produces output file
bedtools ngs sort written 24 months ago by cmccabe120 • updated 24 months ago by James Ashmore2.0k
6
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0
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1.1k
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0
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7
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1
answer
1.5k
views
1
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Size of BAM file reduces after sorting with samtools
genome sequence next-gen samtools sort written 2.2 years ago by shakeelbiochemist0 • updated 2.2 years ago by Sean Davis23k
1
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1
answer
1.0k
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1
answer
samtools sort remapped bam by readname/query name
bam samtools sort written 2.2 years ago by quachtina9620 • updated 2.2 years ago by Pierre Lindenbaum98k
15
votes
4
answers
1.9k
views
14 follow
4
answers
sam/bam file handling -> new tools?
bam sort markduplicates sam written 2.5 years ago by Richard500 • updated 2.5 years ago by lh330k
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