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How to get unique counts saved in a file
linux awk unique counts sort written 1 day ago by kittys • 0 • updated 1 day ago by genomax ♦ 75k
3
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2
answers
104
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2
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Linux sort P-values with scientific notation
pvalue sort scientific notation written 4 weeks ago by Shicheng Guo • 7.8k • updated 4 weeks ago by zx8754 ♦ 8.7k
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1
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149
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1
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How to get chrM chr1 ...chr22 chrX chrY order in my bam file
gatk picard snp bam sort written 6 weeks ago by Ada • 0 • updated 6 weeks ago by jkbonfield • 220
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1
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307
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1
answer
bedtools sort -faidx in CWL
bedtools cwl sort written 6 months ago by dami • 10 • updated 7 weeks ago by kaushik.ghose • 60
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1
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83
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5 follow
1
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Pipe pysam.view() output to pysam.sort()
python sam alignment pysam sort written 8 weeks ago by Macspider • 3.0k • updated 8 weeks ago by gb • 1.2k
3
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1
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149
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How can I get this sorted by ascending order? (when the number and character is together)
sort written 4 months ago by woojoy14 • 0 • updated 4 months ago by Chris Miller ♦ 21k
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2
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5 follow
2
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Tool: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMtools for processing SAM/BAM files
bam sam sort markduplicates bqsr tool written 13 months ago by Charlotte.Herzeel • 140
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6 follow
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How to sort sam file using shell script?
sam file forum samtools sort written 6 months ago by gerrybio2010 • 0 • updated 6 months ago by Bastien Hervé ♦ 4.5k
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1
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410
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bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
bowtie2 alignment samtools sort written 8 months ago by dongchenchen • 10 • updated 8 months ago by h.mon ♦ 28k
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1
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263
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1
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Interpro results analysis
column sort written 9 months ago by ksenia.jravel • 0
3
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0
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468
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0
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CD-HIT results without sorting by length
length cd-hit clustering sort written 11 months ago by Anand Rao • 250
33
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7
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15 follow
7
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Remove duplicates in fasta file based on ID
fasta sed sort written 4.5 years ago by oliver.bayfield • 130 • updated 12 months ago by michau • 20
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1
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492
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samtools sort: legacy usage
genome metagenomics samtools sort written 13 months ago by c.e.chong • 20 • updated 13 months ago by h.mon ♦ 28k
3
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1
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409
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1
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Significant Difference of the File Size between csorted and nsorted BAM file
compress nsort samtools sort csort sort written 15 months ago by Shicheng Guo • 7.8k • updated 13 months ago by Biostar ♦♦ 20
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1
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626
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1
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should FASTA files be sorted before indexed with SAMtools?
fasta sort samtools index written 14 months ago by Timze W • 40 • updated 14 months ago by finswimmer ♦ 13k
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2
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2
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Calculating Average Amino Acid Identity (AAI) using CompareM
sort ani checkm comparem aai written 21 months ago by charles.bridges • 70
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1
answer
578
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1
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sorting a BAM file
bam sort written 16 months ago by Bogdan • 890 • updated 16 months ago by Philipp Bayer ♦ 6.5k
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453
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sort the homo sapiens genes by chromosome with Unix command lines
gene sort written 18 months ago by Huichen03 • 10
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1
answer
520
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1
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Issue while sorting a file
inconsistency trouble sort written 18 months ago by ricfoz • 30 • updated 18 months ago by drkennetz • 440
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1
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4.5k
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1
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Sorting with vcftools for tabix gone wrong
vcf tabix sort vcftools index written 5.2 years ago by axelwilhelm • 100 • updated 19 months ago by Biostar ♦♦ 20
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1
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1
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Samtools sort error with a bam file
bam samtools rna-seq sort written 20 months ago by Vasu • 410 • updated 20 months ago by Devon Ryan ♦ 93k
2
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1
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856
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1
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How to sort an interleaved fastq file by the barcode (BX:Z:) from the header
barcode header interleaved fastq sort written 21 months ago by guillepalou4 • 0 • updated 21 months ago by Pierre Lindenbaum ♦ 124k
8
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1
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975
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1
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Sorting my .bam with samtools produces differences in the fastq files generated afterwards
fastq next-gen samtools bam sort written 21 months ago by guillepalou4 • 0 • updated 21 months ago by Devon Ryan ♦ 93k
2
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0
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575
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Sorting file by column, with missing values
sort glimmer awk written 21 months ago by oars • 160
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1
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1
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How to specify the sort based on name in samtools sort?
htseq bam samtools rna-seq sort written 2.0 years ago by anc.informatics • 0 • updated 2.0 years ago by finswimmer ♦ 13k
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3.7k
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1
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Samtools view command, Exec format error while trying to view a human chromosome region
exec format error region view samtools sort written 2.1 years ago by ricfoz • 30 • updated 2.1 years ago by Hussain Ather • 940
4
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3
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883
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5 follow
3
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unique list based on multiple column
awk sort written 2.1 years ago by Sam • 140 • updated 2.1 years ago by aka001 • 190
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1
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1.3k
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1
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featuresCount order sam file?
gtf featurescount rna-seq sort written 2.4 years ago by noeD • 80 • updated 2.4 years ago by h.mon ♦ 28k
2
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1.3k
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samtools sort stuck during merging
next-gen samtools bamtools sort written 2.4 years ago by Carlo Yague • 4.8k
26
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1
answer
45k
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8 follow
1
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samtools sorting and indexing
index samtools sort written 2.4 years ago by ggman • 80 • updated 2.4 years ago by John ♦ 12k
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