Showing: sortreset
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2
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samtools sorting and indexing
index samtools sort written 27 days ago by ggman40 • updated 27 days ago by John11k
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131
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32
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8
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18k
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10 follow
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Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.4 years ago by Rm7.5k • updated 5 weeks ago by cmdcolin640
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1
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112
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1
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3
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3
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483
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5 follow
3
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Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 7 months ago by yarmda0 • updated 11 weeks ago by Eichan10
72
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5
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36k
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19 follow
5
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Is My Bam File Sorted ?
sequencing next-gen bam sort written 6.5 years ago by Pierre Lindenbaum96k • updated 3 months ago by martin.triska40
17
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6
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8 follow
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Remove duplicates in fasta file based on ID
fasta sed sort written 2.2 years ago by oliver.bayfield90 • updated 5 months ago by Eslam Samir90
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331
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1
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0
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286
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5
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522
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Sort fastq file by coordinate
fastq alignment bam sort written 9 months ago by Beñat20 • updated 7 months ago by Biostar ♦♦ 20
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4
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559
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4
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Script to sort bam file not working
bam samtools unix blast sort written 8 months ago by emth465710 • updated 8 months ago by Santosh Anand2.7k
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2
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521
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2
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Custom sam sort
bam sam rna-seq sort written 11 months ago by thomas.smith270
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1
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359
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1
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a problem when ran vcf-sort
vcf dict sort written 11 months ago by zengtony74360
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1
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403
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1
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Samtools Sort Error
bam samtools sort written 12 months ago by Valeria10
7
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1
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453
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1
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How to sort chromosome name in bed file
bedfile chrmosome sort written 12 months ago by raya.girish20 • updated 12 months ago by genomax31k
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788
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6
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1.2k
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16
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3
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4.9k
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6 follow
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Is the Picard SortSam queryname or coordinate equivalent to samtools sort -n?
picard samtools sort written 3.1 years ago by jon.brate130 • updated 16 months ago by John11k
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1
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742
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Sorted vs unsorted SAM/BAM
bam samtools sam sort written 16 months ago by ofonov10 • updated 16 months ago by mastal5111.7k
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563
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0
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5
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2
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1.5k
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2
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RNA-Seq Analysis: To sort or not to Sort?
htseq myposts sam rna-seq sort written 20 months ago by kanika.15150 • updated 20 months ago by h.mon7.5k
3
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1
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595
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1
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Joining two files with multiple columns
perl grep awk join sort written 21 months ago by vharshavardhanan30 • updated 21 months ago by michael.ante1.6k
6
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4
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925
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4
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9
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2
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1.4k
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2
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coverage bed error but produces output file
bedtools ngs sort written 22 months ago by cmccabe100 • updated 22 months ago by James Ashmore1.7k
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1.0k
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7
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1.4k
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Size of BAM file reduces after sorting with samtools
genome sequence next-gen samtools sort written 2.0 years ago by shakeelbiochemist0 • updated 2.0 years ago by Sean Davis23k
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samtools sort remapped bam by readname/query name
bam samtools sort written 2.1 years ago by quachtina9620 • updated 2.1 years ago by Pierre Lindenbaum96k
15
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4
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1.8k
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14 follow
4
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sam/bam file handling -> new tools?
bam sort markduplicates sam written 2.4 years ago by Richard490 • updated 2.4 years ago by lh330k
9
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1
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3.3k
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5 follow
1
answer
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