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written 2.2 years ago by
shenwei356 ♦ 4.3k
• updated
21 months ago by
RamRS ♦ 19k
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Recent Replies
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A: gwas catalogue containing snp data from genome assembly hg19 by
hsiaoyi0504 • 40
You can use liftover or CrossMap to switch between these two genome assembly version.
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C: Barcode cross contamination by
Seigfried • 60
[@genomax][1] I realised that as well. For a good sequencing run, I found that I discarded around...
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C: Count the number of homozygous and heterozygous variants in VCF file by
aadhirareddy1323 • 20
@finswimmer,I dont want to make the difference , but want to exclude 0|2,0|3 etc and keep only co...
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C: Peptide cutter library by
jongyook2 • 0
Thank you very much!
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A: Extract number of SNPs for any given gene by
Andrew Su ♦ 4.8k
You can get this info using the myvariant.info API. For example, suppose you are interested in S...
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C: How do I use t-test for genes in R? by
JC ♦ 7.0k
Even when you can do the test by yourself, it's better if you use the tools already implement for...
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A: what is vdb_names in blastdb_aliastool by
h.mon ♦ 22k
VDB is a database format to store "next-gen" sequencing data. See the handout [Using SRA Toolkit ...
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C: psmc bootstrap plotting? by
momccarthy.3 • 0
Hey I'm having this same problem, did you find a solution in the end? Cheers, Morgan
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bioinforesearchquestions • 190
Hi VKKodali, I am trying to find consensus between the full genome sequence not against the refer...
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> I thought Bio.PDB was automatically set up to get files from the PDB database I don't think...
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C: Identifying consensus sequence between multiple Arabidopsis genome sequences by
vkkodali • 700
NCBI has a few Arabidopsis genome assembly - assembly alignments [here](ftp://ftp.ncbi.nlm.nih.go...
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C: Filtering fastq vs BAM for fragment size range by
ATpoint ♦ 11k
Yeah, but I cannot answer this, as I never tried. I would always go for the after-alignment step ...
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