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Mean reads length for 400 bp reads in ion Torrent

torrent ngs bacterial read length written 3 months ago by Maloki • 10

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477

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Read simulators for Ion Torrent platform specific for WES

torrent simulation wes ion amliseq written 15 months ago by world_genesis • 0

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1.9k

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Ion Torrent sample data

torrent alignment tool sample ion written 3.5 years ago by Milan Domazet • 10 • updated 3.5 years ago by Keith Callenberg • 890

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Scholar to Mensur Dlakic • 600
Popular Question to ATpoint ♦ 21k
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Recent Replies

C: Using Graphics Processing Units (GPUs) in bioinformatics by WouterDeCoster ♦ 40k
See also https://developer.nvidia.com/Clara-Genomics, and googling "GPU aligner" already returns ...
A: Using Graphics Processing Units (GPUs) in bioinformatics by ATpoint ♦ 21k
HiCCUPS uses GPUs to identify chromosomal loops in HiC data https://github.com/aidenlab/juicer/wi...
C: Using Graphics Processing Units (GPUs) in bioinformatics by jared.andrews07 • 2.9k
Yeah, this is a good point, machine learning packages will often attempt to make use of them, par...
A: Using Graphics Processing Units (GPUs) in bioinformatics by WouterDeCoster ♦ 40k
GPUs are also used in basecalling of nanopore sequencing data, which use RNN machine learning app...
A: Using Graphics Processing Units (GPUs) in bioinformatics by jared.andrews07 • 2.9k
Mostly GPUs are allocated to jobs that have [molecular modeling](https://en.wikipedia.org/wiki/Mo...
C: Using Graphics Processing Units (GPUs) in bioinformatics by RamRS ♦ 23k
Hi, I have removed the extraneous code commenting you had in your post. Please use these formatt...
C: Running blast command line inside python script by finswimmer ♦ 12k
I think it's the same for `read_file` and `blast_output`. I would also recommend to use f-strings...
C: bwa mem -R (RGline) format for DNBseq fastq by ATpoint ♦ 21k
You can even write `cheeseburger` plus an increasing integer to make unique read names behind the...
C: bwa mem -R (RGline) format for DNBseq fastq by joe • 40
A "normal" format would look something like the below (taken from Wikipedia). The main difference...
C: bwa mem -R format for DNBseq fastq by ATpoint ♦ 21k
Maybe it is me but this looks like a normal fastq sequence to me, what is the problem?
C: List of human protein coding genes with given name (known function?) by ATpoint ♦ 21k
Yeah, I guess that would do it. Basically reducing genes to protein-coding is what many microarra...
A: Running blast command line inside python script by Mensur Dlakic • 600
The way you wrote this, `threads` is not interpreted as a variable. It is just a string inside qu...

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