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written 4.4 years ago by
Milan Domazet • 10
• updated
4.4 years ago by
Keith Callenberg • 900
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Recent Replies
-
C: difference between DRAGEN and GATK by
German.M.Demidov • 1.6k
I think (if I recall correctly) Dragen started with GATK as a variant caller, but re-wrote it in ...
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C: difference between DRAGEN and GATK by
genomax ♦ 85k
Start by looking at the versions of GATK. There are substantial differences between newer GATK v....
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A: What's the relation between species colinearity and phylogeny by
Jean-Karim Heriche ♦ 22k
If by colinearity you mean synteny, then there's a relationship with phylogeny. Synteny is someti...
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C: Best practice for finding all genes SNPs, etc. related to a disease or phenotype by
flight505 • 70
@Yean Thanks for that suggestion,I am didn't know about gwasrapidd and I guess that there are sev...
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A: Best practice for finding all genes SNPs, etc. related to a disease or phenotype by
Yean • 110
Apart from curious suggestion, you can automatically retrieve disease-associated SNPs from the GW...
-
C: Best practice for finding all genes SNPs, etc. related to a disease or phenotype by
curious • 320
I don't know about best practices, but the other day I was looking for all snps that have been as...
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C: bwa mem runs slowly the first time by
karel • 0
Your data is probably cached somewhere after calling it for the first time. So the second time yo...
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C: bwa mem runs slowly the first time by
karel • 0
Your data is probably cached somewhere after calling it for the first time. So the second time yo...
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C: Can I extract absolute gene expression from Illumina beadchip human microarray? by
tigeradab • 50
Thank you very much for the reply. After filtering non-expressed genes, I also wish to identify c...
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C: Replace heterozygous GT to missing in vcf file using bcftools by
User000 • 380
Hi, I'm using this command line: `/DATA/Tools/bcftools-1.10.2/bcftools filter -S . -e 'GT=="het"'...
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C: One sample Wilcoxon test for each boxplot ggplot2 by
Alex Nesmelov • 100
If so, I can suggest making a table with p-values calculated for the corresponding Sequence_bioty...
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C: Size of the nr database fasta file? by
Chvatil • 40
Thank you very much for the answer
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