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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 4.4 years ago by Zhenyu Zhang270 • updated 3 months ago by Emad0
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RPKM value and TPM value
normal rpkm tumor tpm written 3 months ago by anjuraas10 • updated 3 months ago by Bastien HervĂ©4.9k
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GATK Mutect2 tumor mode
wgs tumor mutect2 human gatk written 4 months ago by cocchi.e89120
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RNA Seq and Somatic Calls for the Cancer data
somatic tumor rna-seq written 5 months ago by always_learning1.1k • updated 5 months ago by Kevin Blighe69k
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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 6 months ago by youki0 • updated 6 months ago by GenoMax94k
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TMB Tumor Mutation Burden
exome tumor mutation burden cancer written 2.9 years ago by abibioinformatics10 • updated 8 months ago by igor12k
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How to run ABSOLUTE with WGS bam files ?
absolute next-gen matched normal tumor bam file written 4.6 years ago by subhajit06110 • updated 10 months ago by roseluosy0
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Difference between allele1 vs. allele2 in TCGA MAF files?
maf tcga tumor genotype genomics written 10 months ago by jiaqiwu10 • updated 10 months ago by Kevin Blighe69k
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estimate tumor purity from target capture sequencing
purity tumor target capture sequencing estimation written 17 months ago by lffu_003260 • updated 17 months ago by dariober11k
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tumor only variant calling tools
somatic ngs tumor mutation written 3.4 years ago by Zhenyu Zhang270 • updated 18 months ago by mariafirulevabio40
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How can I call somatic CNV in tumor samples with no reference (control) samples?
tumor cnv written 2.1 years ago by Pin.Bioinf270 • updated 2.1 years ago by Kevin Blighe69k
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 3.0 years ago by lait160 • updated 3.0 years ago by morovatunc460
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What is the best way to store clinical and genomic data
exome tumor written 3.4 years ago by bartek0 • updated 3.4 years ago by chen2.1k
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Tool: An online cute tool to query tumor-gene data from MSK-IMPACT project
msk tumor msk-impact tool mutation written 3.7 years ago by chen2.1k • updated 3.7 years ago by youcai60
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