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<prev • 44 results • page 1 of 2 • next >
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public tools to distinguish germline variants from somatic ones in NGS data without matched normal
somatic ngs tumor germline written 7 weeks ago by J.F.Jiang • 860 • updated 24 days ago by Biostar ♦♦ 20
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6
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4.6k
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6
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 4.4 years ago by Zhenyu Zhang • 270 • updated 3 months ago by Emad • 0
1
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1
answer
205
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1
answer
RPKM value and TPM value
normal rpkm tumor tpm written 3 months ago by anjuraas • 10 • updated 3 months ago by Bastien Hervé ♦ 4.9k
133
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10
answers
58k
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73 follow
10
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Database Of Tumor Suppressors And/Or Oncogenes
gene database tumor oncogene cancer written 9.0 years ago by Malachi Griffith ♦ 18k
1
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277
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GATK Mutect2 tumor mode
wgs tumor mutect2 human gatk written 4 months ago by cocchi.e89 • 120
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147
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Max mutation allele frequency against tumor purity
tumor af purity written 4 months ago by J.F.Jiang • 860
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1
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268
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1
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RNA Seq and Somatic Calls for the Cancer data
somatic tumor rna-seq written 5 months ago by always_learning • 1.1k • updated 5 months ago by Kevin Blighe ♦ 69k
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152
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Combining normal+tumor fastq files to make a diluted tumor sample
dilution fastq tumor matchednormal cancer written 6 months ago by noshadho • 10
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279
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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 6 months ago by youki • 0 • updated 6 months ago by GenoMax ♦ 94k
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3
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13 follow
3
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TMB Tumor Mutation Burden
exome tumor mutation burden cancer written 2.9 years ago by abibioinformatics • 10 • updated 8 months ago by igor ♦ 12k
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2
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2.5k
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2
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How to run ABSOLUTE with WGS bam files ?
absolute next-gen matched normal tumor bam file written 4.6 years ago by subhajit06 • 110 • updated 10 months ago by roseluosy • 0
0
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1
answer
328
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1
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Difference between allele1 vs. allele2 in TCGA MAF files?
maf tcga tumor genotype genomics written 10 months ago by jiaqiwu • 10 • updated 10 months ago by Kevin Blighe ♦ 69k
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201
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Cancer association studies and CNAs
tumor cnv written 10 months ago by German.M.Demidov • 1.9k
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1
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278
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1
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No mutations or copy number alterations was detected in stage I of cancer
stage one tumor snp copy number alteration written 13 months ago by nazaninhoseinkhan • 410
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1
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239
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1
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Database about antigens, used in tumor vaccination?
cancer vaccination tumor database written 15 months ago by lefthandgergo • 10
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360
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0
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How rare are somatic mutations?
varscan tumor mutect snp somatic written 15 months ago by syntax • 60
1
vote
1
answer
521
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1
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estimate tumor purity from target capture sequencing
purity tumor target capture sequencing estimation written 17 months ago by lffu_0032 • 60 • updated 17 months ago by dariober ♦ 11k
4
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1
answer
4.2k
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6 follow
1
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tumor only variant calling tools
somatic ngs tumor mutation written 3.4 years ago by Zhenyu Zhang • 270 • updated 18 months ago by mariafirulevabio • 40
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1
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2.0k
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5 follow
1
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How to obtain cancer cell fraction of each mutation in subclones of a single sample
phylogeny R tumor revolver written 21 months ago by fantastycrane • 10 • updated 20 months ago by zx8754 ♦ 9.9k
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510
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Variant calling on matched primary and metastatic tumor without normal samples.
tumor snp written 22 months ago by Venados • 10
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1
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1.3k
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1
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How can I call somatic CNV in tumor samples with no reference (control) samples?
tumor cnv written 2.1 years ago by Pin.Bioinf • 270 • updated 2.1 years ago by Kevin Blighe ♦ 69k
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Classify benign tumor vs malign tumor
indels snps tumor written 2.5 years ago by roalva1 • 80
1
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759
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Allelic fraction and AF histogram
tumor purity sequencing written 2.6 years ago by lorenzo_fabbri • 10
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729
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How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor somatic mutation written 2.9 years ago by CY • 550
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1.1k
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Can we omit the normal input and compare tumor to pon only in MuTect2?
tumor rna-seq mutect written 2.9 years ago by Tania • 130
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 3.0 years ago by lait • 160 • updated 3.0 years ago by morovatunc • 460
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948
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1
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What is the best way to store clinical and genomic data
exome tumor written 3.4 years ago by bartek • 0 • updated 3.4 years ago by chen • 2.1k
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998
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about using cn.MOPS in detecting CNV in WES of germline-tumor samples
tumor cn.mops cnv written 3.6 years ago by Bogdan • 1.1k
2
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1
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6 follow
1
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Tool: An online cute tool to query tumor-gene data from MSK-IMPACT project
msk tumor msk-impact tool mutation written 3.7 years ago by chen • 2.1k • updated 3.7 years ago by youcai • 60
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Can ABSOLUTE be used on Illumina 450k array copy number variation data?
450 absolute tumor copy number variation written 3.9 years ago by n.verburg • 0
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