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GATK Mutect2 tumor mode
wgs tumor mutect2 human gatk written 23 days ago by cocchi.e8990
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RNA Seq and Somatic Calls for the Cancer data
somatic tumor rna-seq written 6 weeks ago by always_learning1.0k • updated 5 weeks ago by Kevin Blighe65k
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CNVkit with tumor only bam and flat reference
cnvkit tumor cnv written 3 months ago by youki0 • updated 3 months ago by genomax90k
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TMB Tumor Mutation Burden
exome tumor mutation burden cancer written 2.6 years ago by abibioinformatics10 • updated 5 months ago by igor11k
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How to run ABSOLUTE with WGS bam files ?
absolute next-gen matched normal tumor bam file written 4.3 years ago by subhajit06110 • updated 6 months ago by roseluosy0
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Difference between allele1 vs. allele2 in TCGA MAF files?
maf tcga tumor genotype genomics written 6 months ago by jiaqiwu0 • updated 6 months ago by Kevin Blighe65k
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Database Of Tumor Suppressors And/Or Oncogenes
gene database tumor oncogene cancer written 8.7 years ago by Malachi Griffith18k • updated 13 months ago by Shicheng Guo8.3k
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estimate tumor purity from target capture sequencing
purity tumor target capture sequencing estimation written 13 months ago by lffu_003250 • updated 13 months ago by dariober11k
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tumor only variant calling tools
somatic ngs tumor mutation written 3.1 years ago by Zhenyu Zhang270 • updated 15 months ago by mariafirulevabio40
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How can I call somatic CNV in tumor samples with no reference (control) samples?
tumor cnv written 21 months ago by Pin.Bioinf270 • updated 21 months ago by Kevin Blighe65k
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detecting mutations in cancer samples belonging to the same cancer type
tumor ngs wes pipeline cancer written 2.7 years ago by lait150 • updated 2.7 years ago by morovatunc460
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single sample somatic variant calling software
ffpe somatic tumor pipeline variants written 4.1 years ago by Zhenyu Zhang270 • updated 2.9 years ago by daniel30
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What is the best way to store clinical and genomic data
exome tumor written 3.1 years ago by bartek0 • updated 3.1 years ago by chen2.1k
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Tool: An online cute tool to query tumor-gene data from MSK-IMPACT project
msk tumor msk-impact tool mutation written 3.4 years ago by chen2.1k • updated 3.4 years ago by youcai50
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Freebayes tumor vs. normal inquiry
ngs tumor freebayes snp written 4.4 years ago by alons270 • updated 4.0 years ago by sambrightman20
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