Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
1
reply
360
views
How to obtain TPM data after batch effect correction from count data obtained using RSEM
STAR RNA-seq Batch RSEM effect
updated 13 days ago by ★ 7.9k • written 13 days ago by ▴ 170
0
votes
0
replies
331
views
When I want to compare two groups at multiple time points in scRNA-seq datasets, the criteria for the genes to be analyzed
Seurat scRNA-seq
25 days ago by Apprentice ▴ 170
0
votes
0
replies
1.0k
views
Comment: Comment: Commands for processing mixed 4-sample scRNA-seq data with cellranger
3 months ago by Apprentice ▴ 170
0
votes
1
reply
1.0k
views
Comment: Comment: Commands for processing mixed 4-sample scRNA-seq data with cellranger
3 months ago by Apprentice ▴ 170
0
votes
4
replies
1.0k
views
Commands for processing mixed 4-sample scRNA-seq data with cellranger
Cellranger scRNA-seq Chromium
3 months ago by Apprentice ▴ 170
0
votes
0
replies
1.2k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
3 months ago by Apprentice ▴ 170
2
votes
7
replies
1.2k
views
Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
scRNA-seq CellRanger hdWGCNA Seurat
3 months ago by Apprentice ▴ 170
0
votes
1
reply
1.2k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
4 months ago by Apprentice ▴ 170
0
votes
0
replies
1.2k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
4 months ago by Apprentice ▴ 170
0
votes
1
reply
1.2k
views
Comment: Comment: Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
4 months ago by Apprentice ▴ 170
0
votes
0
replies
485
views
Comment: Comment: Can I use FDR twice for multiple correction in a two-stage study using omics dat
4 months ago by Apprentice ▴ 170
0
votes
2
replies
485
views
Can I use FDR twice for multiple correction in a two-stage study using omics data.
statistical omics-data testing RNA-seq
4 months ago by Apprentice ▴ 170
5
votes
15
replies
7.2k
views
6 follow
Why are there many reads with green color in IGV of RNA-seq data?
rna-seq IGV mapping
updated 13 months ago by • 0 • written 5.8 years ago by ▴ 170
0
votes
0
replies
1.1k
views
Comment: Comment: Calculation of λ1000 for a continuous trait
13 months ago by Apprentice ▴ 170
0
votes
3
replies
1.1k
views
Calculation of λ1000 for a continuous trait
SNP GWAS inflation
13 months ago by Apprentice ▴ 170
0
votes
0
replies
2.2k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
14 months ago by Apprentice ▴ 170
0
votes
1
reply
2.2k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
14 months ago by Apprentice ▴ 170
0
votes
0
replies
2.2k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
15 months ago by Apprentice ▴ 170
0
votes
3
replies
2.2k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
15 months ago by Apprentice ▴ 170
7
votes
15
replies
2.2k
views
6 follow
I would like to exclude rRNA in RSEM and quantify other genes.
STAR RNA-seq RSEM
updated 14 months ago by ★ 7.3k • written 15 months ago by ▴ 170
0
votes
0
replies
675
views
Comment: Comment: I would like to add a human gene sequence to a mouse reference genome
15 months ago by Apprentice ▴ 170
0
votes
2
replies
675
views
I would like to add a human gene sequence to a mouse reference genome
reference-genome mouse RNA-seq
updated 15 months ago by 45k • written 15 months ago by ▴ 170
0
votes
0
replies
467
views
If the names of miRNAs are the same for different species, are they the same sequence?
miRNA
16 months ago by Apprentice ▴ 170
0
votes
0
replies
363
views
Method for detecting X-chromosome aneuploidy from SNP array data
SNP aneuploidies
18 months ago by Apprentice ▴ 170
0
votes
1
reply
1.4k
views
Comment: Comment: LD score table for East Asians used for BOLT-LMM
19 months ago by Apprentice ▴ 170
2
votes
3
replies
1.4k
views
LD score table for East Asians used for BOLT-LMM
BOLT-LMM SNP LDSC
updated 19 months ago by 4.9k • written 20 months ago by ▴ 170
0
votes
0
replies
756
views
Comment: Comment: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
20 months ago by Apprentice ▴ 170
2
votes
2
replies
756
views
Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
RNA-seq STAR-Fusion
20 months ago by Apprentice ▴ 170
0
votes
0
replies
456
views
PLINK format file for BOLT-LMM
BOLT-LMM SNP
20 months ago by Apprentice ▴ 170
0
votes
0
replies
1.6k
views
Comment: Comment: RSEM uses different gene lengths for each sample.
20 months ago by Apprentice ▴ 170
5
votes
3
replies
1.6k
views
RSEM uses different gene lengths for each sample.
STAR RNA-seq RSEM
20 months ago by Apprentice ▴ 170
0
votes
0
replies
1.9k
views
Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
21 months ago by Apprentice ▴ 170
0
votes
0
replies
1.9k
views
Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
21 months ago by Apprentice ▴ 170
0
votes
1
reply
1.9k
views
Comment: Comment: Is RSEM required for RNA-seq data analysis using STAR and edgeR?
21 months ago by Apprentice ▴ 170
3
votes
8
replies
1.9k
views
Is RSEM required for RNA-seq data analysis using STAR and edgeR?
edgeR RNA-seq STAR
21 months ago by Apprentice ▴ 170
0
votes
0
replies
434
views
Popcorn using SNPs with extremely low P-value
Popcorn SNP
22 months ago by Apprentice ▴ 170
2
votes
1
reply
854
views
PRSice-2 using SNPs with extremely low P-value
PRSice-2 SNP
22 months ago by Apprentice ▴ 170
1
vote
0
replies
854
views
Answer: Answer: PRSice-2 using SNPs with extremely low P-value
22 months ago by Apprentice ▴ 170
0
votes
0
replies
527
views
I want to set the null hypothesis for the test of genetic correlation to rg=1.
correlation LDSC genetic
23 months ago by Apprentice ▴ 170
1
vote
3
replies
1.6k
views
Which 1000 genomes 30x files should I use for imputation?
1000genomes imputation SNP
updated 11 months ago by • 0 • written 2.3 years ago by ▴ 170
0
votes
1
reply
1.6k
views
Comment: Comment: Which 1000 genomes 30x files should I use for imputation?
2.3 years ago by Apprentice ▴ 170
0
votes
0
replies
1.1k
views
Comment: Comment: I want to identify the version of MethylationEPIC from the idat file.
2.4 years ago by Apprentice ▴ 170
1
vote
2
replies
1.1k
views
I want to identify the version of MethylationEPIC from the idat file.
Microarray methylation DNA
2.4 years ago by Apprentice ▴ 170
0
votes
1
reply
724
views
Application of repeated measurement data to missForest
R missForest
2.7 years ago by Apprentice ▴ 170
0
votes
0
replies
724
views
Answer: Answer: Application to repeated measurement data
2.8 years ago by Apprentice ▴ 170
0
votes
0
replies
810
views
Comment: Comment: Significance of giving read group when using hisat2
3.1 years ago by Apprentice ▴ 170
2
votes
2
replies
810
views
Significance of giving read group when using hisat2
RNA-Seq
3.1 years ago by Apprentice ▴ 170
0
votes
0
replies
1.7k
views
Comment: Comment: Unable to get all Uniprot IDs corresponding to Ensembl ID
3.2 years ago by Apprentice ▴ 170
5
votes
3
replies
1.7k
views
Unable to get all Uniprot IDs corresponding to Ensembl ID
Uniprot biomaRt
3.2 years ago by Apprentice ▴ 170
0
votes
0
replies
1.3k
views
Comment: Comment: Is it possible to infer from miRNA-seq fastq data which species it is obtained f
3.2 years ago by Apprentice ▴ 170
139 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6