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Cross validate RNA-seq and ATAC-seq
DAR cross-validation DEG ATAC-seq RNA-seq
updated 4 weeks ago by 78k • written 5 weeks ago by ▴ 10
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1
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4.5k
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Comment: Comment: Which method is the best for using in "dba.count" in Diffbind R package
5 weeks ago by Wang Cong ▴ 10
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3
replies
571
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How to make barplots for multi sample gene ontology analysis
enrichment-analysis GO
updated 7 months ago by ▴ 10 • written 7 months ago by ▴ 10
0
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1
reply
414
views
More than one proteins in one row in mass spectrometry data
proteomics mass_spectrometry
updated 7 months ago by 78k • written 7 months ago by ▴ 10
0
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1
reply
339
views
How to extract proteins from PCs in plot_pca in DEP package?
DEP PCA Proteomics
updated 8 months ago by 78k • written 8 months ago by ▴ 10
0
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1
reply
276
views
How to compare RNA expression correlation?
RNA-seq cancer-cell-line correlation
9 months ago by Wang Cong ▴ 10
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0
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343
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How to investigate correlation between transcript and protein abundance?
regulation data-mining gene correlation
9 months ago by Wang Cong ▴ 10
0
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1
reply
1.4k
views
Comment: Comment: Unable to install clusterProfiler on Mac M1
10 months ago by Wang Cong ▴ 10
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1
reply
1.4k
views
Comment: Comment: Unable to install clusterProfiler on Mac M1
10 months ago by Wang Cong ▴ 10
0
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5
replies
1.4k
views
Unable to install clusterProfiler on Mac M1
install M1 Mac clusterProfiler
updated 10 months ago by 136k • written 10 months ago by ▴ 10
1
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0
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288
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GSEA: different species in gene set and RNA-seq data
RNA-seq GSEA
10 months ago by Wang Cong ▴ 10
1
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4
replies
1.1k
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Extract paired-end reads with one end falls within a given region from a bam file
samtools
updated 5 months ago by 41k • written 15 months ago by ▴ 10
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0
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147k
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Comment: Comment: Extract Reads From A Bam File That Fall Within A Given Region
15 months ago by Wang Cong ▴ 10
1
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3
replies
625
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Problem with extracting reverse-reverse read pairs
samtools bam alignment
updated 5 months ago by 41k • written 15 months ago by ▴ 10
0
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0
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812
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Comment: Comment: How to extra read pair orientation from paired end reads
15 months ago by Wang Cong ▴ 10
0
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1
reply
812
views
Comment: Comment: How to extra read pair orientation from paired end reads
updated 15 months ago by 158k • written 15 months ago by ▴ 10
0
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1
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812
views
Comment: Comment: How to extra read pair orientation from paired end reads
15 months ago by Wang Cong ▴ 10
1
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6
replies
812
views
How to extra read pair orientation from paired end reads
hi-c alignment samtools
15 months ago by Wang Cong ▴ 10
0
votes
1
reply
579
views
Comment: Comment: 3 reads with the same ID in sam file
17 months ago by Wang Cong ▴ 10
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0
replies
1.2k
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Comment: Comment: what is bam format file flag 0x2 mean?
17 months ago by Wang Cong ▴ 10
0
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1
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468
views
Comment: Comment: Will flags in sam files be updated after filtering?
17 months ago by Wang Cong ▴ 10
2
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3
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468
views
Will flags in sam files be updated after filtering?
sam alignment samtools
17 months ago by Wang Cong ▴ 10
3
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4
replies
579
views
3 reads with the same ID in sam file
sam alignment samtools
updated 17 months ago by 158k • written 17 months ago by ▴ 10
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