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3
votes
6
replies
994
views
Output FindMarkers()
seurat
8 months ago by Chris ▴ 260
4
votes
7
replies
1.3k
views
Help with Error: None of the requested features were found: PECAM1 in slot data
seurat multiome
8 months ago by Chris ▴ 260
0
votes
0
replies
375
views
Help with analyze single cell multiome (RNA and ATAC-seq)
seurat signac multiome
8 months ago by Chris ▴ 260
3
votes
3
replies
542
views
How to choose the number of cluster in single cell multiome (RNA & ATAC)
multiome
8 months ago by Chris ▴ 260
4
votes
7
replies
803
views
Help with weighted nearest neighbor analysis
seurat single-cell
8 months ago by Chris ▴ 260
1
vote
6
replies
1.9k
views
How to run CallPeaks()
signac
8 months ago by Chris ▴ 260
0
votes
0
replies
298
views
Assign gene to peak in bulk ATAC-seq
ATAC-seq
8 months ago by Chris ▴ 260
1
vote
2
replies
717
views
Help with the error: Cannot find assay integrated
seurat
8 months ago by Chris ▴ 260
0
votes
2
replies
565
views
Help with an error with Homer
Homer
8 months ago by Chris ▴ 260
0
votes
0
replies
327
views
Quality control ATAC-seq, using plotFingerprint deepTools
deeptools
8 months ago by Chris ▴ 260
5
votes
11
replies
1.0k
views
Make heatmap for RNA-seq with non replicate
RNA-seq
updated 8 months ago by 43k • written 8 months ago by ▴ 260
10
votes
16
replies
1.6k
views
Filter gene with low count in RNA-seq using a function from edgeR
edgeR RNA-seq
updated 9 months ago by ▴ 100 • written 9 months ago by ▴ 260
10
votes
21
replies
3.3k
views
How to interpret heatmap using plotheatmap from deeptools?
ATAC-seq deeptools
9 months ago by Chris ▴ 260
3
votes
4
replies
5.0k
views
Help with DiffBind Generating report-based DBA object... Error: No valid contrasts/methods specified.
DiffBind
updated 9 months ago by ★ 16k • written 9 months ago by ▴ 260
3
votes
4
replies
1.4k
views
Heatmap for ATAC-seq
ATAC-seq ComplexHeatmap
updated 9 months ago by ★ 16k • written 9 months ago by ▴ 260
0
votes
0
replies
262
views
Help to get differential_peaks.bed to use for findMotifsGenome.pl?
ATAC-seq HOMER
9 months ago by Chris ▴ 260
0
votes
0
replies
335
views
Help with an error from chromVAR
R chromVAR
updated 9 months ago by 43k • written 9 months ago by ▴ 260
2
votes
5
replies
888
views
How to make chromVAR plot?
ATAC-seq
9 months ago by Chris ▴ 260
2
votes
1
reply
421
views
Help with an ATAC-seq cartoon
ATAC-seq
updated 9 months ago by ▴ 900 • written 9 months ago by ▴ 260
5
votes
7
replies
842
views
About the value in bigwig file
ATAC-seq
updated 9 months ago by ▴ 900 • written 10 months ago by ▴ 260
7
votes
13
replies
1.7k
views
Threshold for a value of RPKM considered significant
RNA-seq
updated 10 months ago by ★ 5.9k • written 10 months ago by ▴ 260
13
votes
10
replies
1.7k
views
Should and can we use the new draft pangenome reference?
reference-genome
10 months ago by Chris ▴ 260
2
votes
1
reply
781
views
Sample sheet file for DiffBind
DiffBind
updated 10 months ago by ★ 2.0k • written 10 months ago by ▴ 260
9
votes
17
replies
2.6k
views
Interpret plots from DiffBind
DiffBind
updated 9 months ago by ★ 2.0k • written 10 months ago by ▴ 260
10
votes
15
replies
1.8k
views
Can't find a variant which suppose must have in a vcf file
variant-calling bcftools nf-core
10 months ago by Chris ▴ 260
3
votes
4
replies
705
views
Help with don't have ID when running bcftools annotate
bcftools
10 months ago by Chris ▴ 260
2
votes
5
replies
3.1k
views
How to fix ModuleNotFoundError: No module named 'skmisc'?
skmisc
updated 9 months ago by • 0 • written 18 months ago by ▴ 260
7
votes
10
replies
1.5k
views
How to get genes associated with open chromatin regions?
ATAC-seq
10 months ago by Chris ▴ 260
3
votes
6
replies
1.0k
views
Screen for transcription factors/genes that maybe the cause of a disease/difference in a phenotype
RNA-seq ATAC-seq
10 months ago by Chris ▴ 260
7
votes
13
replies
2.4k
views
Help with running ATAC using Encode pipeline
encode ATAC-seq
updated 10 months ago by ▴ 900 • written 11 months ago by ▴ 260
3
votes
2
replies
635
views
How to download iGenomes from S3
iGenome
11 months ago by Chris ▴ 260
3
votes
3
replies
580
views
About per tile sequence quality
fastqc
updated 11 months ago by 141k • written 11 months ago by ▴ 260
1
vote
2
replies
1.4k
views
Help with ERROR: Paired-end reads were detected in single-end read library
featureCounts
11 months ago by Chris ▴ 260
6
votes
12
replies
2.0k
views
Help with error in cellranger
Cellranger
updated 11 months ago by 141k • written 11 months ago by ▴ 260
12
votes
22
replies
2.6k
views
Help with error in GATK variant calling
GATK
updated 11 months ago by 43k • written 11 months ago by ▴ 260
3
votes
6
replies
685
views
How to interpret plot from igv_session.xml file
ATAC
11 months ago by Chris ▴ 260
0
votes
0
replies
326
views
How to set the 'PASS' value in the filter column of a VCF file with '.' only?
vcf
12 months ago by Chris ▴ 260
7
votes
13
replies
1.6k
views
Help with error in snpEff command
snpEff
12 months ago by Chris ▴ 260
5
votes
10
replies
858
views
Error when viewing a bam file
samtools
updated 10 months ago by 43k • written 12 months ago by ▴ 260
2
votes
4
replies
858
views
Missing ID and filter column in a vcf file
vcf
12 months ago by Chris ▴ 260
7
votes
11
replies
1.2k
views
Variant calling using samtools
bcftools
updated 10 months ago by 43k • written 12 months ago by ▴ 260
5
votes
7
replies
1.0k
views
Help with samtools
samtools
updated 10 months ago by 43k • written 12 months ago by ▴ 260
2
votes
5
replies
782
views
How to check a gene in an open chromatin region or not?
ATAC-seq
11 months ago by Chris ▴ 260
1
vote
1
reply
665
views
Positive and negative value fold value in ATAC seq using DiffBind
ATAC seq
updated 12 months ago by ★ 2.0k • written 12 months ago by ▴ 260
2
votes
4
replies
806
views
Help with error makeTxDbFromGFF in GenomicFeatures package
ATAC-seq
12 months ago by Chris ▴ 260
0
votes
2
replies
474
views
Question about different lengths of fragments in ATAC-seq
ATAC
updated 12 months ago by 82k • written 12 months ago by ▴ 260
1
vote
1
reply
980
views
fragments.tsv.gz file in ATAC seq
ATAC-seq
updated 5 months ago by ▴ 10 • written 13 months ago by ▴ 260
2
votes
4
replies
632
views
Error with a function in ATAC-seq analysis
ATAC-seq
13 months ago by Chris ▴ 260
6
votes
11
replies
1.7k
views
Calculate RPKM
RPKM
13 months ago by Chris ▴ 260
0
votes
0
replies
387
views
ATAC seq fragment file
ATAC-seq
updated 13 months ago by 43k • written 13 months ago by ▴ 260
139 results • Page 2 of 3
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