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Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
CDS Genome NCBI Genbank
updated 8 weeks ago by 43k • written 3 months ago by ▴ 70
0
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2
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598
views
GO enrichment of DEGs - DeNovo RNAseq
DeNovo GO RNA-seq
8 months ago by Sowmya Pulapet ▴ 70
5
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5
replies
1.0k
views
Number of genes covered in WES
targetsequencing WES coverage bedfile
updated 9 months ago by ★ 4.3k • written 9 months ago by ▴ 70
0
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2
replies
841
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Error: free(): invalid next size (fast) and Aborted (core dumped) while using R in Linux server
WGBS R MethylKit
10 months ago by Sowmya Pulapet ▴ 70
2
votes
0
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309
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How to to lncRNA analysis from WTS data ?
lncRNA-seq WTS mRNA-seq
11 months ago by Sowmya Pulapet ▴ 70
2
votes
2
replies
684
views
Genome scope for Hybrid assembly
Genomescope fastq Hybrid-assembly
updated 11 months ago by 43k • written 11 months ago by ▴ 70
4
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6
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2.8k
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Convert Nanopore Fast5 files to Fasta format
fast5 fasta Nanopore
12 months ago by Sowmya Pulapet ▴ 70
0
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0
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604
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ANNOVAR filter based annotation - ClinVar
Annovar clinvar
updated 13 months ago by 43k • written 13 months ago by ▴ 70
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4
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942
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Combine VCF files
vcf bcftools
updated 14 months ago by 100k • written 14 months ago by ▴ 70
9
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8
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1.8k
views
7 follow
What are Differentially Expressed Genes ?!!
FDR DEG p-value logFC
updated 14 months ago by 88k • written 15 months ago by ▴ 70
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4
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1.4k
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blast engine error empty blast query vector
Blast alignment
updated 12 months ago by 43k • written 15 months ago by ▴ 70
0
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2
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670
views
Number of samples for lefse analysis
16s Lefse metagenome.
16 months ago by Sowmya Pulapet ▴ 70
2
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3
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2.0k
views
blastn error : mdb_env_open: No such file or directory
Makeblastdb sequence_alignment Blastn
updated 17 months ago by 142k • written 17 months ago by ▴ 70
3
votes
6
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1.1k
views
Upregulated and downregulated genes from ChIP-seq data
ChIP-seq RNAseq DEG
17 months ago by Sowmya Pulapet ▴ 70
0
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0
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438
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Q30 score from MultiQC
qualityscore Q30 FastQC MultiQC
18 months ago by Sowmya Pulapet ▴ 70
0
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0
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322
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Local blast with large query and subject file
fasta alignment Blast
18 months ago by Sowmya Pulapet ▴ 70
0
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0
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381
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KEGG analysis for shotgun sequencing
Functional-annotation Shotgunsequencing KEGG
18 months ago by Sowmya Pulapet ▴ 70
1
vote
1
reply
491
views
Functional annotation of VCF files
annotation ontology Functional gene VCF
updated 19 months ago by 6.2k • written 19 months ago by ▴ 70
1
vote
7
replies
1.3k
views
Error with txi.salmon in R
RNAseq salmon quantification gff
updated 20 months ago by 82k • written 20 months ago by ▴ 70
0
votes
0
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373
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Gene symbol from trinotate annotation report
gene Trinity Trinotate Annotation symbol
21 months ago by Sowmya Pulapet ▴ 70
0
votes
1
reply
681
views
Error with Gatk Haplotypecaller
Gatk Haplotypecaller Bam
updated 21 months ago by 161k • written 21 months ago by ▴ 70
2
votes
9
replies
2.9k
views
How to Create a multi-sample VCF file
VCF multi-sample
22 months ago by Sowmya Pulapet ▴ 70
0
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0
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536
views
Error while using GATK Haplotypecaller
Gatk Haplotypecaller Bam
22 months ago by Sowmya Pulapet ▴ 70
0
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6
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1.1k
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VEP synonyms file
Ensembl-VEP annotation synonyms
22 months ago by Sowmya Pulapet ▴ 70
0
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0
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438
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VEP custom annotation - synonymous file
Ensembl-VEP annotation synonymsfile
22 months ago by Sowmya Pulapet ▴ 70
2
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9
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2.0k
views
Different line length in fasta file
Fasta VEP Ensembl-VEP annotation samtools
updated 11 months ago by 43k • written 22 months ago by ▴ 70
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