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5.7k
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Reading AD and other genotype information from the VCF file
R vcf
updated 25 days ago by 166k • written 25 days ago by ▴ 60
0
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0
replies
7.4k
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Comment: Comment: Criteria for choosing variants
26 days ago by ramiro.barrantes ▴ 60
0
votes
3
replies
7.4k
views
Criteria for choosing variants
variant RNASeq
26 days ago by ramiro.barrantes ▴ 60
0
votes
1
reply
928
views
combat_met error: mu_hat_mat[, batches_ind[[jj]]] : subscript out of bounds
combat_met epigenetics
updated 5 weeks ago by 3.4k • written 5 weeks ago by ▴ 60
0
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1
reply
1.2k
views
Comment: Comment: Creating kraken2 custom database
3 months ago by ramiro.barrantes ▴ 60
0
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1
reply
1.2k
views
Comment: Comment: Creating kraken2 custom database
3 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Creating kraken2 custom database
3 months ago by ramiro.barrantes ▴ 60
1
vote
7
replies
1.2k
views
Creating kraken2 custom database
kraken2
updated 3 months ago by 154k • written 3 months ago by ▴ 60
0
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1
reply
882
views
Comment: Comment: How to deal with intermediate files
3 months ago by ramiro.barrantes ▴ 60
0
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1
reply
882
views
Comment: Comment: How to deal with intermediate files
3 months ago by ramiro.barrantes ▴ 60
2
votes
7
replies
882
views
How to deal with intermediate files
procedures data operations
updated 3 months ago by 154k • written 3 months ago by ▴ 60
0
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0
replies
715
views
Comment: Comment: TCGA Germline allelic fraction distribution
4 months ago by ramiro.barrantes ▴ 60
0
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0
replies
715
views
Comment: Comment: TCGA Germline allelic fraction distribution
4 months ago by ramiro.barrantes ▴ 60
3
votes
3
replies
715
views
TCGA Germline allelic fraction distribution
calling variant tcga
4 months ago by ramiro.barrantes ▴ 60
2
votes
2
replies
629
views
Interpreting a vcf file
variant vcf
updated 5 months ago by ★ 4.3k • written 5 months ago by ▴ 60
0
votes
1
reply
856
views
Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
updated 7 months ago by 154k • written 7 months ago by ▴ 60
0
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1
reply
856
views
Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
7 months ago by ramiro.barrantes ▴ 60
0
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5
replies
856
views
Variant calling in tumor/normal pairs is calling heterozygous positions
variant
updated 7 months ago by ★ 1.6k • written 7 months ago by ▴ 60
0
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0
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639
views
Comment: Comment: Gene level expression versus variant-level expression
7 months ago by ramiro.barrantes ▴ 60
0
votes
2
replies
639
views
Gene level expression versus variant-level expression
variant RNASeq
7 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Annotating Illumna epic probes
8 months ago by ramiro.barrantes ▴ 60
0
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0
replies
1.2k
views
Comment: Comment: Annotating Illumna epic probes
8 months ago by ramiro.barrantes ▴ 60
2
votes
5
replies
1.2k
views
Annotating Illumna epic probes
R illumina EPIC
updated 8 months ago by ★ 3.1k • written 8 months ago by ▴ 60
3
votes
2
replies
1.0k
views
biomart hangs
biomaRt
updated 10 months ago by ★ 1.7k • written 10 months ago by ▴ 60
0
votes
0
replies
454
views
Optimizing mutect/sarek for somatic substitution variant calling
mutect2 tumor-normal sarek variant-calling
updated 11 months ago by 45k • written 11 months ago by ▴ 60
2
votes
3
replies
1.1k
views
Statistics of methylation experiments
methylation
updated 13 months ago by ▴ 830 • written 13 months ago by ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: Statistics of methylation experiments
13 months ago by ramiro.barrantes ▴ 60
4
votes
2
replies
971
views
How can I get the list of all human ensembl transcript ids?
Ensembl
updated 13 months ago by ▴ 170 • written 13 months ago by ▴ 60
0
votes
0
replies
515
views
Different SNPs found: WGS aligned to WES
WES alignment WGS
13 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
671
views
Analysis of Illumina Infinium MethylationEPIC v2.0
MethylationEPIC Infinium
updated 14 months ago by ▴ 50 • written 14 months ago by ▴ 60
0
votes
0
replies
446
views
parseCSQToGRanges in VariantAnnotation
bioconductor
14 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
805
views
GATK GRCh38 genome version for biomaRt
biomart
updated 15 months ago by 154k • written 15 months ago by ▴ 60
2
votes
2
replies
1.3k
views
Example human WGS fastq data
WGS
updated 15 months ago by ★ 4.7k • written 15 months ago by ▴ 60
0
votes
1
reply
798
views
What database to use for GATK baseRecalibration when using the ensembl hg19 genome
ensembl gatk
updated 16 months ago by 154k • written 16 months ago by ▴ 60
1
vote
1
reply
784
views
Calculate allelic frequency from VEP output vcf file
VEP variant
16 months ago by ramiro.barrantes ▴ 60
1
vote
0
replies
784
views
Answer: Answer: Calculate allelic frequency from VEP output vcf file
16 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: Finding variants within a subset of a BAM file
16 months ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.0k
views
Finding variants within a subset of a BAM file
variant calling
16 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
516
views
Correct genome version for ncbi37
ensembl biomart
19 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
1.1k
views
Correct biomart version for TCGA data
TCGA sarek biomart
updated 20 months ago by ▴ 410 • written 20 months ago by ▴ 60
0
votes
1
reply
659
views
Determining whether a sample is H1N1 or H3N2
alignment virus amplicon
updated 21 months ago by 154k • written 21 months ago by ▴ 60
0
votes
1
reply
681
views
Mapping a variant to the uniprot sequence
protein SNPs sequence
updated 3.0 years ago by 154k • written 3.0 years ago by ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: Where to find an older transcript version?
3.0 years ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.4k
views
Where to find an older transcript version?
sequence biomart
3.0 years ago by ramiro.barrantes ▴ 60
0
votes
0
replies
1.4k
views
Comment: Comment: Finding unique regions in a sequence
3.1 years ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.4k
views
Finding unique regions in a sequence
seq peptide sequence blast
3.1 years ago by ramiro.barrantes ▴ 60
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