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2
votes
2
replies
5.9k
views
Reading AD and other genotype information from the VCF file
R vcf
updated 1 day ago by ★ 90k • written 10 weeks ago by ▴ 60
3
votes
3
replies
1.3k
views
biomart hangs
biomaRt
updated 4 days ago by ★ 90k • written 11 months ago by ▴ 60
0
votes
0
replies
7.5k
views
Comment: Comment: Criteria for choosing variants
10 weeks ago by ramiro.barrantes ▴ 60
0
votes
3
replies
7.5k
views
Criteria for choosing variants
variant RNASeq
10 weeks ago by ramiro.barrantes ▴ 60
0
votes
2
replies
1.4k
views
combat_met error: mu_hat_mat[, batches_ind[[jj]]] : subscript out of bounds
combat_met epigenetics
updated 4 weeks ago by • 0 • written 12 weeks ago by ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Creating kraken2 custom database
5 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Creating kraken2 custom database
5 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.6k
views
Comment: Comment: Creating kraken2 custom database
5 months ago by ramiro.barrantes ▴ 60
1
vote
7
replies
1.6k
views
Creating kraken2 custom database
kraken2
updated 5 months ago by 154k • written 5 months ago by ▴ 60
0
votes
1
reply
1.0k
views
Comment: Comment: How to deal with intermediate files
5 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.0k
views
Comment: Comment: How to deal with intermediate files
5 months ago by ramiro.barrantes ▴ 60
2
votes
7
replies
1.0k
views
How to deal with intermediate files
procedures data operations
updated 5 months ago by 154k • written 5 months ago by ▴ 60
0
votes
0
replies
818
views
Comment: Comment: TCGA Germline allelic fraction distribution
5 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
818
views
Comment: Comment: TCGA Germline allelic fraction distribution
5 months ago by ramiro.barrantes ▴ 60
3
votes
3
replies
818
views
TCGA Germline allelic fraction distribution
calling variant tcga
5 months ago by ramiro.barrantes ▴ 60
2
votes
2
replies
720
views
Interpreting a vcf file
variant vcf
updated 6 months ago by ★ 4.4k • written 6 months ago by ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
updated 8 months ago by 154k • written 8 months ago by ▴ 60
0
votes
1
reply
1.2k
views
Comment: Comment: Variant calling in tumor/normal pairs is calling heterozygous positions
8 months ago by ramiro.barrantes ▴ 60
0
votes
5
replies
1.2k
views
Variant calling in tumor/normal pairs is calling heterozygous positions
variant
updated 8 months ago by ★ 1.6k • written 8 months ago by ▴ 60
0
votes
0
replies
734
views
Comment: Comment: Gene level expression versus variant-level expression
8 months ago by ramiro.barrantes ▴ 60
0
votes
2
replies
734
views
Gene level expression versus variant-level expression
variant RNASeq
8 months ago by ramiro.barrantes ▴ 60
0
votes
1
reply
1.5k
views
Comment: Comment: Annotating Illumna epic probes
9 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: Annotating Illumna epic probes
9 months ago by ramiro.barrantes ▴ 60
2
votes
5
replies
1.5k
views
Annotating Illumna epic probes
R illumina EPIC
updated 9 months ago by ★ 3.1k • written 9 months ago by ▴ 60
0
votes
0
replies
514
views
Optimizing mutect/sarek for somatic substitution variant calling
mutect2 tumor-normal sarek variant-calling
updated 13 months ago by 45k • written 13 months ago by ▴ 60
2
votes
3
replies
1.2k
views
Statistics of methylation experiments
methylation
updated 14 months ago by ▴ 890 • written 14 months ago by ▴ 60
0
votes
0
replies
1.2k
views
Comment: Comment: Statistics of methylation experiments
14 months ago by ramiro.barrantes ▴ 60
4
votes
2
replies
1.1k
views
How can I get the list of all human ensembl transcript ids?
Ensembl
updated 14 months ago by ▴ 170 • written 14 months ago by ▴ 60
0
votes
0
replies
553
views
Different SNPs found: WGS aligned to WES
WES alignment WGS
14 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
843
views
Analysis of Illumina Infinium MethylationEPIC v2.0
MethylationEPIC Infinium
updated 15 months ago by ▴ 50 • written 15 months ago by ▴ 60
0
votes
0
replies
495
views
parseCSQToGRanges in VariantAnnotation
bioconductor
16 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
904
views
GATK GRCh38 genome version for biomaRt
biomart
updated 17 months ago by 154k • written 17 months ago by ▴ 60
2
votes
2
replies
1.4k
views
Example human WGS fastq data
WGS
updated 17 months ago by ★ 4.7k • written 17 months ago by ▴ 60
0
votes
1
reply
873
views
What database to use for GATK baseRecalibration when using the ensembl hg19 genome
ensembl gatk
updated 17 months ago by 154k • written 17 months ago by ▴ 60
1
vote
1
reply
867
views
Calculate allelic frequency from VEP output vcf file
VEP variant
18 months ago by ramiro.barrantes ▴ 60
1
vote
0
replies
867
views
Answer: Answer: Calculate allelic frequency from VEP output vcf file
18 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
1.1k
views
Comment: Comment: Finding variants within a subset of a BAM file
18 months ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.1k
views
Finding variants within a subset of a BAM file
variant calling
18 months ago by ramiro.barrantes ▴ 60
0
votes
0
replies
573
views
Correct genome version for ncbi37
ensembl biomart
21 months ago by ramiro.barrantes ▴ 60
1
vote
1
reply
1.2k
views
Correct biomart version for TCGA data
TCGA sarek biomart
updated 21 months ago by ▴ 410 • written 21 months ago by ▴ 60
0
votes
1
reply
723
views
Determining whether a sample is H1N1 or H3N2
alignment virus amplicon
updated 22 months ago by 154k • written 22 months ago by ▴ 60
0
votes
1
reply
741
views
Mapping a variant to the uniprot sequence
protein SNPs sequence
updated 3.1 years ago by 154k • written 3.1 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: Where to find an older transcript version?
3.1 years ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.5k
views
Where to find an older transcript version?
sequence biomart
3.1 years ago by ramiro.barrantes ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: Finding unique regions in a sequence
3.2 years ago by ramiro.barrantes ▴ 60
2
votes
3
replies
1.5k
views
Finding unique regions in a sequence
seq peptide sequence blast
3.2 years ago by ramiro.barrantes ▴ 60
46 results • Page 1 of 1
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