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6
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5
replies
7.1k
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Tutorial: Parallel AUGUSTUS Execution via GNU Parallel
augustus genome ngs parallel
updated 27 days ago by • 0 • written 12 months ago by ▴ 100
3
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3
replies
1.9k
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Started running InterProscan locally. Looks like the process isn't progressing well. Can you look at the report?
genome interproscan annotation
updated 8 months ago by • 0 • written 12 months ago by ▴ 100
0
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0
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777
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Comment: Comment: Can you help me understand these lines in the completed braker.log
10 months ago by Vijith ▴ 100
1
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2
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777
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Can you help me understand these lines in the completed braker.log
augustus braker genome annotation
updated 10 months ago by 16k • written 10 months ago by ▴ 100
0
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1
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5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
10 months ago by Vijith ▴ 100
0
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0
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5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
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0
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5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
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0
replies
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
1
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1
reply
5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
1
vote
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
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3
replies
5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
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0
replies
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
0
replies
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
1
vote
0
replies
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
27
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35
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5.6k
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Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other…
star RAN-seq bam genome indexing
updated 10 months ago by ★ 2.9k • written 11 months ago by ▴ 100
0
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0
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5.6k
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Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
0
replies
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
1
reply
5.6k
views
Comment: Comment: Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to
11 months ago by Vijith ▴ 100
0
votes
0
replies
456
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Need help with providing RNA Seq data to run braker.pl in ETP mode.
augustus gene-prediction rna-seq braker genemark
11 months ago by Vijith ▴ 100
1
vote
0
replies
1.2k
views
Comment: Comment: merging of two assemblies from different short-reads techniques
11 months ago by Vijith ▴ 100
1
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1
reply
1.2k
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Answer: Answer: merging of two assemblies from different short-reads techniques
11 months ago by Vijith ▴ 100
0
votes
1
reply
7.1k
views
Comment: Comment: Parallel AUGUSTUS Execution via GNU Parallel
12 months ago by Vijith ▴ 100
0
votes
0
replies
938
views
Comment: Comment: Need help with AUGUSTUS and AGAT for gene prediction and feature extraction, res
12 months ago by Vijith ▴ 100
2
votes
2
replies
938
views
Need help with AUGUSTUS and AGAT for gene prediction and feature extraction, respectively.
augustus AGAT annotation genome agat
updated 12 months ago by 9.3k • written 12 months ago by ▴ 100
1
vote
0
replies
987
views
Comment: Comment: Extraction of miRNA Sequences from Infernal cmscan Output Using Python
14 months ago by Vijith ▴ 100
3
votes
2
replies
987
views
Extraction of miRNA Sequences from Infernal cmscan Output Using Python
infernal assembly rna genome mirna
updated 14 months ago by ▴ 650 • written 14 months ago by ▴ 100
0
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0
replies
433
views
miRNA prediction using mirMachine; what are the ways to study the functional significance of miRNAs?
annotation assembly mirmachine mirna
16 months ago by Vijith ▴ 100
0
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1
reply
1.4k
views
Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
17 months ago by Vijith ▴ 100
0
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1
reply
1.4k
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Comment: Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
17 months ago by Vijith ▴ 100
1
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4
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1.4k
views
Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene prediction.
augustus annotation assembly genome
updated 17 months ago by 9.3k • written 17 months ago by ▴ 100
0
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1
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1.2k
views
Comment: Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
17 months ago by Vijith ▴ 100
2
votes
3
replies
1.2k
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus annotation assembly genome
updated 17 months ago by ★ 3.1k • written 17 months ago by ▴ 100
0
votes
0
replies
511
views
Successfully identified and Masked rpeats using RM. What Next?
sequence annotation repeatmasker illumina assembly
17 months ago by Vijith ▴ 100
0
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1
reply
2.2k
views
Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
18 months ago by Vijith ▴ 100
2
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3
replies
2.2k
views
Should I use Dfam or a custom repetitve elements library (from PlantRep) as a repeat database; using RepeatMasker in a Linux machine?
genome sequence repeatmasker blast
updated 18 months ago by ▴ 490 • written 18 months ago by ▴ 100
1
vote
1
reply
750
views
What could be a better K-mer for my WGS assembly task using ABySS, with my current hardware profile.
ABySS genome k-mer assembly
updated 20 months ago by ★ 1.8k • written 20 months ago by ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
21 months ago by Vijith ▴ 100
3
votes
7
replies
1.9k
views
"C++ compiler cannot create executables", while installing ABySS 2.0 assembler
assembly illumina abyss btllib paired-end
updated 21 months ago by ★ 1.5k • written 21 months ago by ▴ 100
0
votes
0
replies
1.9k
views
Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
21 months ago by Vijith ▴ 100
0
votes
0
replies
1.9k
views
Comment: Comment: "C++ compiler cannot create executables", while installing ABySS 2.0 assembler
21 months ago by Vijith ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: Seeking help with a hybrid assembly. I have a batch of linked-reads from NovaSeq
2.0 years ago by Vijith ▴ 100
3
votes
5
replies
1.9k
views
I have a pair of read files where each is a mixed pool of reads from the Linked-read technology and Illumina short-read technology. Any suggestion on…
NGS clc-genomics illumina WGS
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 100
0
votes
2
replies
1.6k
views
Comment: Comment: I have performed Trimmomatic run for adapter removal. QC report shows drop in th
2.0 years ago by Vijith ▴ 100
2
votes
3
replies
1.6k
views
I have performed Trimmomatic run for adapter removal. QC report shows drop in the reads and presence of overrepresented sequences. Seeking help!
NGS illumina WGS
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 100
0
votes
0
replies
849
views
Can someone help me to programmatically implement skewed normal distribution fitting on the given data points?
python probability normal distribution
2.2 years ago by Vijith ▴ 100
0
votes
0
replies
8.3k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
2.4 years ago by Vijith ▴ 100
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