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Answer: Answer: Error in using repeat mask genome for tophat2
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 960
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5
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2.8k
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Error in using repeat mask genome for tophat2
Tophat2 sequence RNA-Seq Assembly
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 960
0
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1
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2.8k
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Comment: Comment: Error in using repeat mask genome for tophat2
updated 3.6 years ago by 45k • written 10.8 years ago by ▴ 960
0
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0
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2.8k
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Finding SSR marker in genome scale with comparison
DNA genome SSR
10.8 years ago by Whoknows ▴ 960
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0
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6.7k
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Comment: Comment: Pathway analysis for transcriptome profiles
updated 3.6 years ago by 45k • written 10.9 years ago by ▴ 960
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4.6k
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Comment: C: how to annotate transcriptome
10.9 years ago by Whoknows ▴ 960
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4.6k
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Answer: A: how to annotate transcriptome
11.0 years ago by Whoknows ▴ 960
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3.0k
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Answer: Answer: Predict Protein-Protein Interactions
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 960
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0
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6.3k
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Answer: Answer: Finding orthologous gene within species
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 960
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0
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19k
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Answer: Answer: Best software to assemble bacterial genomes
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 960
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0
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6.3k
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Comment: C: Finding orthologous gene within species
11.0 years ago by Whoknows ▴ 960
2
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0
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3.9k
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Futher analysis on Trinity fasta output
Assembly trinity RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 960
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1
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3.5k
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Comment: Comment: Problem in analyzing Rice RNA-Seq data
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
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5
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3.5k
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Problem in analyzing Rice RNA-Seq data
tophat DESeq HTSeq cufflinks DESeq2
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
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3.5k
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Comment: Comment: Problem in analyzing Rice RNA-Seq data
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
2
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1
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3.7k
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Confusion in HTSeq paired-end output count
HTSeq tophat
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
4
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3
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4.2k
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Sinking into the swamp by Using DESeq without replicates !!
HTSeq DESeq RNA-Seq Tophat
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 960
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3
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18k
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Comment: Comment: Convert HTSeq count table to RPKM value using GFF/GTF
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
2
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1
reply
2.8k
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Normalization in DESeq
HTSeq DESeq RNA-Seq Tophat
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 960
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0
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10k
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Comment: Comment: Calculating RPKM for DESeq
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 960
14
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5
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10k
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Calculating RPKM for DESeq
RNA-Seq HTSeq DESEQ Tophat
updated 2.7 years ago by ▴ 360 • written 11.2 years ago by ▴ 960
2
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1
reply
7.2k
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Using HTSeq for paired-end files
HTSeq DeSeq RNA-Seq Tophat
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 960
0
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4
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3.8k
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Exact match in blastn
blastall blastn mismatch
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
0
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1
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3.8k
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Comment: Comment: Exact match in blastn
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
1
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0
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2.6k
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Using Mireap for the Plant miRNA discovery
Mireap Small-RNA miRNA
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
3
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5
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2.0k
views
1-based coordiante system for sam files
sam bowtie
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
0
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1
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2.0k
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Answer: Answer: 1-based coordiante system for sam files
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
0
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1
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2.0k
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Comment: C: 1-based coordiante system for sam files
11.4 years ago by Whoknows ▴ 960
0
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1
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6.6k
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Comment: C: Finding significantly differentiall expressed genes in RNA-Seq with one sample
11.4 years ago by Whoknows ▴ 960
15
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7
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6.6k
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Finding significantly differentiall expressed genes in RNA-Seq with one sample
RNA-SEQ p-value
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
2
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0
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3.5k
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Answer: Answer: How to map protein interaction from different species?
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
2
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1
reply
2.5k
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Answer: Answer: human functionaly related genes
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 960
0
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1
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3.5k
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Bed file score , mismatch , and other column information
sam miRNA bowtie bed
updated 4.1 years ago by 45k • written 11.5 years ago by ▴ 960
0
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0
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12k
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Answer: A: What Does Distinguish Header From Content In Bed Files?
11.5 years ago by Whoknows ▴ 960
4
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10
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5.8k
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How to create color range for RPKM/FPKM using R?
RNA-Seq R Graphic ggplot2 gplots
11.5 years ago by Whoknows ▴ 960
0
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1
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5.8k
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Comment: C: How to create color range for RPKM/FPKM using R?
11.5 years ago by Whoknows ▴ 960
0
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2
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5.8k
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Comment: C: How to create color range for RPKM/FPKM using R?
11.5 years ago by Whoknows ▴ 960
2
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0
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3.5k
views
Answer: A: how to change the header of input file
11.5 years ago by Whoknows ▴ 960
138 results • Page 3 of 3
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