Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
891
views
Comment: Comment: Slingshot python error
3.4 years ago by Whoknows ▴ 960
6
votes
11
replies
18k
views
Convert HTSeq count table to RPKM value using GFF/GTF
tophat RPKM HTSeq
updated 3.8 years ago by 45k • written 11.1 years ago by ▴ 960
1
vote
2
replies
2.8k
views
Software suggestion for RRBS DMR (methylation) analysis?
methylation RRBS next-gen
updated 5.3 years ago by ▴ 540 • written 8.2 years ago by ▴ 960
2
votes
0
replies
51k
views
Answer: A: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
updated 5.8 years ago by 45k • written 9.3 years ago by ▴ 960
0
votes
1
reply
5.8k
views
Answer: A: How to create color range for RPKM/FPKM using R?
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 960
0
votes
1
reply
22k
views
Answer: A: Obtaining the top matches from blast
updated 6.1 years ago by 45k • written 11.4 years ago by ▴ 960
7
votes
9
replies
6.9k
views
Tophat2 shows error during running
RNA-seq Python Tophat
updated 2.8 years ago by 45k • written 10.5 years ago by ▴ 960
0
votes
0
replies
4.7k
views
Answer: A: DNA sequence of genes from vcf file
8.2 years ago by Whoknows ▴ 960
1
vote
1
reply
2.2k
views
ROC for biomarker discovery
microarray
updated 8.3 years ago by ▴ 330 • written 8.5 years ago by ▴ 960
4
votes
1
reply
6.2k
views
How to filter mutect2 VCF output?
gatk mutect2 SNP alignment
updated 8.3 years ago by ★ 3.2k • written 8.4 years ago by ▴ 960
0
votes
0
replies
6.6k
views
Answer: A: Download genes from KEGG pathway
8.3 years ago by Whoknows ▴ 960
0
votes
0
replies
2.7k
views
Comment: C: Urgent request - Pipeline for finding somatic and germline mutations of a cancer
8.4 years ago by Whoknows ▴ 960
66
votes
3
replies
316k
views
Understanding up and down regulated genes from LOG2 foldchange or foldchange
protein gene-expression RNA-Seq
updated 2.7 years ago by 45k • written 11.5 years ago by ▴ 960
3
votes
2
replies
2.7k
views
Urgent request - Pipeline for finding somatic and germline mutations of a cancer patient
exome next-gen SNP
updated 8.4 years ago by ★ 4.8k • written 8.4 years ago by ▴ 960
0
votes
0
replies
2.4k
views
Answer: A: How to obtain more GO terms for transcripts
8.4 years ago by Whoknows ▴ 960
0
votes
0
replies
9.0k
views
Comment: C: GO enrichment analysis with human ENSEMBL ids
8.4 years ago by Whoknows ▴ 960
2
votes
1
reply
9.0k
views
Answer: A: GO enrichment analysis with human ENSEMBL ids
8.4 years ago by Whoknows ▴ 960
1
vote
1
reply
10k
views
Answer: A: NCBI vs Ensembl - which one to chose - for downloading protein fasta files
8.4 years ago by Whoknows ▴ 960
3
votes
1
reply
2.8k
views
Forum: Pipeline suggestions for GO & pathway analysis for species without reference genome
next-gen RNA-Seq de-novo
updated 2.5 years ago by 45k • written 8.5 years ago by ▴ 960
0
votes
0
replies
13k
views
Answer: A: Best tool to find potential TF binding sites within a specific DNA sequence?
8.5 years ago by Whoknows ▴ 960
0
votes
1
reply
3.9k
views
Answer: A: Ways to merge GO terms from different analyses?
8.5 years ago by Whoknows ▴ 960
1
vote
1
reply
2.5k
views
Answer: A: differential expression of miRNA
8.5 years ago by Whoknows ▴ 960
0
votes
0
replies
3.1k
views
Comment: C: How to find novel gene/isoform in 1 RNA-SEQ sample?
8.5 years ago by Whoknows ▴ 960
1
vote
3
replies
3.1k
views
How to find novel gene/isoform in 1 RNA-SEQ sample?
RNA-Seq next-gen
updated 8.5 years ago by 7.6k • written 8.5 years ago by ▴ 960
0
votes
1
reply
3.2k
views
Comment: C: How to deal with RNA-SEQ samples with different number of raw reads?
8.5 years ago by Whoknows ▴ 960
3
votes
0
replies
3.7k
views
Answer: A: Improve Large Heatmap Generation in R
8.5 years ago by Whoknows ▴ 960
0
votes
6
replies
3.2k
views
How to deal with RNA-SEQ samples with different number of raw reads?
RNA-Seq alignment
updated 8.5 years ago by 105k • written 8.5 years ago by ▴ 960
0
votes
1
reply
2.5k
views
blastx strand in output file
strand genome sequence blast
updated 9.0 years ago by ▴ 480 • written 9.0 years ago by ▴ 960
1
vote
0
replies
7.0k
views
Comment: A: Handbooks for Bioinformatics Ninjas
9.0 years ago by Whoknows ▴ 960
1
vote
3
replies
3.0k
views
blastx output cut-off for creating gff
gff blastx ngs
9.0 years ago by Whoknows ▴ 960
1
vote
0
replies
3.0k
views
Answer: A: blastx output cut-off for creating gff
9.0 years ago by Whoknows ▴ 960
0
votes
0
replies
5.0k
views
Answer: A: Statistical test to compare the number of upregulated genes in a subgroup of gen
9.1 years ago by Whoknows ▴ 960
0
votes
0
replies
3.3k
views
Comment: C: CLC worcbench assembly
9.1 years ago by Whoknows ▴ 960
0
votes
0
replies
5.3k
views
Answer: A: Outliers detection methods for RNA-Seq data
9.1 years ago by Whoknows ▴ 960
1
vote
1
reply
5.2k
views
Comment: C: how to draw COG Histogram ?
9.1 years ago by Whoknows ▴ 960
1
vote
1
reply
5.2k
views
Answer: A: how to draw COG Histogram ?
9.1 years ago by Whoknows ▴ 960
1
vote
0
replies
4.1k
views
Answer: A: How to visualize read depth based on genomic location
9.1 years ago by Whoknows ▴ 960
4
votes
11
replies
4.1k
views
How to visualize read depth based on genomic location
tophat bed bigwig RNA-Seq
9.1 years ago by Whoknows ▴ 960
0
votes
1
reply
4.1k
views
Comment: C: How to visualize read depth based on genomic location
9.2 years ago by Whoknows ▴ 960
0
votes
1
reply
4.1k
views
Comment: C: How to visualize read depth based on genomic location
9.2 years ago by Whoknows ▴ 960
0
votes
1
reply
4.1k
views
Comment: C: How to visualize read depth based on genomic location
9.2 years ago by Whoknows ▴ 960
0
votes
1
reply
4.1k
views
Comment: C: How to visualize read depth based on genomic location
9.2 years ago by Whoknows ▴ 960
2
votes
0
replies
18k
views
Answer: A: Convert HTSeq count table to RPKM value using GFF/GTF
9.2 years ago by Whoknows ▴ 960
3
votes
1
reply
6.3k
views
Answer: Answer: Finding orthologous gene within species
updated 3.7 years ago by 45k • written 11.0 years ago by ▴ 960
0
votes
0
replies
6.3k
views
Comment: C: Finding orthologous gene within species
9.2 years ago by Whoknows ▴ 960
0
votes
1
reply
6.3k
views
Answer: A: Finding orthologous gene within species
9.2 years ago by Whoknows ▴ 960
0
votes
0
replies
6.2k
views
Comment: C: Unequal paired-end fastq size after quality control
9.2 years ago by Whoknows ▴ 960
0
votes
0
replies
1.9k
views
Answer: A: RNAseq assembly for diploid genome.
9.2 years ago by Whoknows ▴ 960
0
votes
0
replies
6.2k
views
Comment: C: Unequal paired-end fastq size after quality control
9.2 years ago by Whoknows ▴ 960
6
votes
9
replies
6.2k
views
Unequal paired-end fastq size after quality control
RNA-Seq fastq Trimmomatic
updated 9.2 years ago by ★ 2.1k • written 9.2 years ago by ▴ 960
138 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6