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Comment: Comment: Slingshot python error
11 months ago by Whoknows ▴ 960
6
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11
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15k
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Convert HTSeq count table to RPKM value using GFF/GTF
tophat RPKM HTSeq
updated 17 months ago by 39k • written 8.7 years ago by ▴ 960
1
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2
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1.8k
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Software suggestion for RRBS DMR (methylation) analysis?
methylation RRBS next-gen
updated 2.9 years ago by ▴ 510 • written 5.8 years ago by ▴ 960
2
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0
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42k
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Answer: A: Up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2016)
updated 3.4 years ago by 39k • written 6.9 years ago by ▴ 960
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1
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3.9k
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Answer: A: How to create color range for RPKM/FPKM using R?
updated 3.4 years ago by 39k • written 9.1 years ago by ▴ 960
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1
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19k
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Answer: A: Obtaining the top matches from blast
updated 3.7 years ago by 39k • written 9.0 years ago by ▴ 960
7
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9
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5.2k
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Tophat2 shows error during running
RNA-seq Python Tophat
updated 4 months ago by 39k • written 8.1 years ago by ▴ 960
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0
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3.0k
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Answer: A: DNA sequence of genes from vcf file
5.8 years ago by Whoknows ▴ 960
1
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1
reply
1.7k
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ROC for biomarker discovery
microarray
updated 5.9 years ago by ▴ 320 • written 6.0 years ago by ▴ 960
4
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1
reply
5.1k
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How to filter mutect2 VCF output?
gatk mutect2 SNP alignment
updated 5.9 years ago by ★ 3.1k • written 5.9 years ago by ▴ 960
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0
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4.6k
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Answer: A: Download genes from KEGG pathway
5.9 years ago by Whoknows ▴ 960
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0
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1.9k
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Comment: C: Urgent request - Pipeline for finding somatic and germline mutations of a cancer
6.0 years ago by Whoknows ▴ 960
65
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3
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274k
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Understanding up and down regulated genes from LOG2 foldchange or foldchange
protein gene-expression RNA-Seq
updated 3 months ago by 39k • written 9.0 years ago by ▴ 960
3
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2
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1.9k
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Urgent request - Pipeline for finding somatic and germline mutations of a cancer patient
exome next-gen SNP
updated 6.0 years ago by ★ 4.6k • written 6.0 years ago by ▴ 960
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0
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1.7k
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Answer: A: How to obtain more GO terms for transcripts
6.0 years ago by Whoknows ▴ 960
0
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0
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5.5k
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Comment: C: GO enrichment analysis with human ENSEMBL ids
6.0 years ago by Whoknows ▴ 960
2
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1
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5.5k
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Answer: A: GO enrichment analysis with human ENSEMBL ids
6.0 years ago by Whoknows ▴ 960
1
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1
reply
6.1k
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Answer: A: NCBI vs Ensembl - which one to chose - for downloading protein fasta files
6.0 years ago by Whoknows ▴ 960
3
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1
reply
2.2k
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Forum: Pipeline suggestions for GO & pathway analysis for species without reference genome
next-gen RNA-Seq de-novo
updated 23 days ago by 39k • written 6.0 years ago by ▴ 960
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0
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6.2k
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Answer: A: Best tool to find potential TF binding sites within a specific DNA sequence?
6.0 years ago by Whoknows ▴ 960
0
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1
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2.8k
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Answer: A: Ways to merge GO terms from different analyses?
6.0 years ago by Whoknows ▴ 960
1
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1
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1.6k
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Answer: A: differential expression of miRNA
6.0 years ago by Whoknows ▴ 960
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0
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2.3k
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Comment: C: How to find novel gene/isoform in 1 RNA-SEQ sample?
6.0 years ago by Whoknows ▴ 960
1
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3
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2.3k
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How to find novel gene/isoform in 1 RNA-SEQ sample?
RNA-Seq next-gen
updated 6.0 years ago by 7.5k • written 6.0 years ago by ▴ 960
0
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1
reply
2.2k
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Comment: C: How to deal with RNA-SEQ samples with different number of raw reads?
6.0 years ago by Whoknows ▴ 960
3
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0
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2.6k
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Answer: A: Improve Large Heatmap Generation in R
6.0 years ago by Whoknows ▴ 960
0
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6
replies
2.2k
views
How to deal with RNA-SEQ samples with different number of raw reads?
RNA-Seq alignment
updated 6.0 years ago by 103k • written 6.0 years ago by ▴ 960
0
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1
reply
1.9k
views
blastx strand in output file
strand genome sequence blast
updated 6.5 years ago by ▴ 480 • written 6.5 years ago by ▴ 960
1
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0
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5.2k
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Comment: A: Handbooks for Bioinformatics Ninjas
6.5 years ago by Whoknows ▴ 960
1
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0
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2.0k
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Answer: A: blastx output cut-off for creating gff
6.5 years ago by Whoknows ▴ 960
1
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3
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2.0k
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blastx output cut-off for creating gff
gff blastx ngs
6.5 years ago by Whoknows ▴ 960
0
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0
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2.9k
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Answer: A: Statistical test to compare the number of upregulated genes in a subgroup of gen
6.7 years ago by Whoknows ▴ 960
0
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0
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2.1k
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Comment: C: CLC worcbench assembly
6.7 years ago by Whoknows ▴ 960
0
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0
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3.3k
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Answer: A: Outliers detection methods for RNA-Seq data
6.7 years ago by Whoknows ▴ 960
1
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1
reply
3.0k
views
Comment: C: how to draw COG Histogram ?
6.7 years ago by Whoknows ▴ 960
1
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1
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3.0k
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Answer: A: how to draw COG Histogram ?
6.7 years ago by Whoknows ▴ 960
4
votes
11
replies
2.2k
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How to visualize read depth based on genomic location
tophat bed bigwig RNA-Seq
6.7 years ago by Whoknows ▴ 960
1
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0
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2.2k
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Answer: A: How to visualize read depth based on genomic location
6.7 years ago by Whoknows ▴ 960
0
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1
reply
2.2k
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Comment: C: How to visualize read depth based on genomic location
6.7 years ago by Whoknows ▴ 960
0
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1
reply
2.2k
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Comment: C: How to visualize read depth based on genomic location
6.7 years ago by Whoknows ▴ 960
0
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1
reply
2.2k
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Comment: C: How to visualize read depth based on genomic location
6.7 years ago by Whoknows ▴ 960
0
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1
reply
2.2k
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Comment: C: How to visualize read depth based on genomic location
6.7 years ago by Whoknows ▴ 960
2
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0
replies
15k
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Answer: A: Convert HTSeq count table to RPKM value using GFF/GTF
6.7 years ago by Whoknows ▴ 960
3
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1
reply
3.9k
views
Answer: Answer: Finding orthologous gene within species
updated 15 months ago by 39k • written 8.5 years ago by ▴ 960
0
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0
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3.9k
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Comment: C: Finding orthologous gene within species
6.8 years ago by Whoknows ▴ 960
0
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1
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3.9k
views
Answer: A: Finding orthologous gene within species
6.8 years ago by Whoknows ▴ 960
0
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0
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4.0k
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Comment: C: Unequal paired-end fastq size after quality control
6.8 years ago by Whoknows ▴ 960
0
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0
replies
1.1k
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Answer: A: RNAseq assembly for diploid genome.
6.8 years ago by Whoknows ▴ 960
0
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0
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4.0k
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Comment: C: Unequal paired-end fastq size after quality control
6.8 years ago by Whoknows ▴ 960
6
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9
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4.0k
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Unequal paired-end fastq size after quality control
RNA-Seq fastq Trimmomatic
updated 6.8 years ago by ★ 2.1k • written 6.8 years ago by ▴ 960
138 results • Page 1 of 3
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