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4
votes
7
replies
631
views
Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
17 days ago by e.r.zakiev ▴ 210
1
vote
2
replies
625
views
Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
8 weeks ago by e.r.zakiev ▴ 210
2
votes
1
reply
305
views
Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 3 months ago by ★ 2.4k • written 3 months ago by ▴ 210
0
votes
0
replies
209
views
cNMF vs LIGER
NMF correction batch
5 months ago by e.r.zakiev ▴ 210
0
votes
0
replies
356
views
P-value for comparing GSVA scores
GSVA
updated 6 months ago by 43k • written 6 months ago by ▴ 210
1
vote
2
replies
447
views
Which embedding for clustering of cells in single-cell RNAseq?
tSNE ICA clustering PCA UMAP
6 months ago by e.r.zakiev ▴ 210
16
votes
7
replies
1.7k
views
When should I NOT apply batch correction for my single-cell RNAseq data?
scRNA-seq batch-correction
updated 7 months ago by 43k • written 7 months ago by ▴ 210
6
votes
5
replies
718
views
barcodes not show up in overrepresented sequences in FASTQC
ribo-seq barcodes
updated 10 months ago by 142k • written 10 months ago by ▴ 210
3
votes
2
replies
484
views
Panther db Reference List
pantherdb enrichment-tests
updated 11 months ago by 43k • written 11 months ago by ▴ 210
3
votes
1
reply
476
views
Why not use ONLY promoter-bound peaks when testing for enrichment in differentially-bound regions?
ChIP-seq ChIPseeker GO
updated 13 months ago by 43k • written 13 months ago by ▴ 210
2
votes
5
replies
1.4k
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 14 months ago by 13k • written 14 months ago by ▴ 210
12
votes
8
replies
1.6k
views
Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools STAR
14 months ago by e.r.zakiev ▴ 210
0
votes
0
replies
427
views
Double-pass with STAR for better detection of spliced variants in assessing quality of FFPE RNAseq data: should I go for it?
RNA-seq STAR
updated 14 months ago by 43k • written 14 months ago by ▴ 210
3
votes
1
reply
691
views
Which reference transcriptome/genome to use for mus musculus if I know the particular strain involved in the experiment?
mice alignment genome transcriptome
updated 14 months ago by 43k • written 14 months ago by ▴ 210
4
votes
1
reply
573
views
TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq adapters Truseq BLAST
updated 15 months ago by 82k • written 15 months ago by ▴ 210
15 results • Page 1 of 1
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