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3
votes
3
replies
1.3k
views
install SCP problem
SCP
updated 2 hours ago by 89k • written 2.4 years ago by ▴ 140
1
vote
1
reply
929
views
annotation before integration
integration annotation
updated 22 months ago by ★ 4.7k • written 22 months ago by ▴ 140
0
votes
0
replies
1.2k
views
scanpy problem for empty cells
scanpy
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 140
1
vote
1
reply
2.9k
views
scanpy add metadata
scanpy metadata
updated 2.1 years ago by ▴ 120 • written 2.3 years ago by ▴ 140
1
vote
3
replies
10k
views
using scanpy to merge objects
scanpy scRNA-seq single-cell
updated 2.1 years ago by ▴ 120 • written 2.4 years ago by ▴ 140
0
votes
0
replies
483
views
Question about relative contribution calculation
relative-contribution
updated 2.2 years ago by 45k • written 2.2 years ago by ▴ 140
0
votes
0
replies
1.9k
views
Comment: Comment: Can I using scVI to integrate data, then using R to conduct following analysis?
2.2 years ago by Andy ▴ 140
2
votes
3
replies
1.9k
views
Can I using scVI to integrate data, then using R to conduct following analysis?
R python single-cell
2.2 years ago by Andy ▴ 140
0
votes
0
replies
823
views
Questions Arising from Using Scanpy for Data Input and scVI for Batch Effect Removal
single scanpy cell scvi
2.2 years ago by Andy ▴ 140
0
votes
0
replies
788
views
How to decide number of features
object number features Seurat of
2.3 years ago by Andy ▴ 140
0
votes
0
replies
6.3k
views
Comment: Comment: subset data problem
2.3 years ago by Andy ▴ 140
0
votes
0
replies
6.3k
views
Comment: Comment: subset data problem
2.3 years ago by Andy ▴ 140
0
votes
0
replies
6.3k
views
Comment: Comment: subset data problem
updated 2.3 years ago by 154k • written 2.3 years ago by ▴ 140
1
vote
8
replies
6.3k
views
subset data problem
R seurat
2.3 years ago by Andy ▴ 140
0
votes
1
reply
2.1k
views
Seurat object problem
Seurat
updated 2.3 years ago by 90k • written 2.3 years ago by ▴ 140
2
votes
3
replies
1.8k
views
Integration more than one million cell
scRNA-seq single-cell
updated 22 months ago by 89k • written 2.3 years ago by ▴ 140
8
votes
7
replies
2.9k
views
new visualization method for dimension reduction technique
dimension-reduction
updated 2.3 years ago by ★ 30k • written 2.3 years ago by ▴ 140
0
votes
1
reply
2.9k
views
Comment: Comment: new visualization method for dimension reduction technique
2.3 years ago by Andy ▴ 140
0
votes
0
replies
2.9k
views
Comment: Comment: new visualization method for dimension reduction technique
2.3 years ago by Andy ▴ 140
0
votes
0
replies
2.9k
views
Comment: Comment: new visualization method for dimension reduction technique
2.3 years ago by Andy ▴ 140
1
vote
1
reply
1.2k
views
Comment: Comment: snakemake and snakefile question.
2.3 years ago by Andy ▴ 140
2
votes
2
replies
1.2k
views
snakemake and snakefile question.
snakemake
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 140
0
votes
0
replies
2.9k
views
Comment: Comment: vector::reserve error message
2.3 years ago by Andy ▴ 140
0
votes
1
reply
2.9k
views
Comment: Comment: vector::reserve error message
2.3 years ago by Andy ▴ 140
0
votes
0
replies
951
views
Comment: Comment: scIB pipeline error
2.3 years ago by Andy ▴ 140
0
votes
2
replies
2.9k
views
vector::reserve error message (Problem solved)
R
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 140
0
votes
2
replies
951
views
scIB pipeline error
pipeline scib
2.3 years ago by Andy ▴ 140
0
votes
0
replies
705
views
Comment: Comment: conos error
2.3 years ago by Andy ▴ 140
0
votes
1
reply
705
views
conos error
conos batch-effect
2.3 years ago by Andy ▴ 140
0
votes
1
reply
1.1k
views
change gene id to gene name
gene id name
updated 2.3 years ago by ★ 4.7k • written 2.3 years ago by ▴ 140
0
votes
0
replies
5.4k
views
Comment: Comment: In Scanpy, how to RDS file and merge it with other Scanpy objects.
2.3 years ago by Andy ▴ 140
7
votes
2
replies
5.4k
views
In Scanpy, how to RDS file and merge it with other Scanpy objects.
scanpy file RDS
2.3 years ago by Andy ▴ 140
0
votes
0
replies
674
views
fastMNN problem
fastMNN
updated 2.3 years ago by 90k • written 2.4 years ago by ▴ 140
0
votes
0
replies
1.8k
views
Comment: Comment: Merge more than 150 Seurat objects together for further analysis
2.4 years ago by Andy ▴ 140
0
votes
2
replies
1.8k
views
Merge more than 150 Seurat objects together for further analysis
seurat objects merge
2.4 years ago by Andy ▴ 140
0
votes
0
replies
1.2k
views
Comment: Comment: Batch correction score and bio conservation score how to get those?
2.4 years ago by Andy ▴ 140
2
votes
2
replies
1.2k
views
Batch correction score and bio conservation score how to get those?
Batch-correction bio-conservation
updated 2.4 years ago by 45k • written 2.4 years ago by ▴ 140
0
votes
0
replies
5.2k
views
Comment: Comment: Merge really large amount of Seurat objects
2.4 years ago by Andy ▴ 140
2
votes
3
replies
5.2k
views
Merge really large amount of Seurat objects
Seurat
2.4 years ago by Andy ▴ 140
0
votes
1
reply
5.2k
views
Comment: Comment: Merge really large amount of Seurat objects
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 140
0
votes
0
replies
10k
views
Comment: Comment: using scanpy to merge objects
2.4 years ago by Andy ▴ 140
0
votes
1
reply
10k
views
Comment: Comment: using scanpy to merge objects
2.4 years ago by Andy ▴ 140
1
vote
1
reply
942
views
How to extract one Seurat object from an RDS file.
seurat object
updated 2.4 years ago by ★ 19k • written 2.4 years ago by ▴ 140
1
vote
3
replies
1.7k
views
What is the best integration package for large single cell RNA sequencing dataset.
scRNA-seq integration
updated 20 months ago by 13k • written 2.4 years ago by ▴ 140
0
votes
0
replies
926
views
Comment: Comment: Integrate RDS files
2.4 years ago by Andy ▴ 140
0
votes
0
replies
1.2k
views
Comment: Comment: fastq.gz how to split.
2.4 years ago by Andy ▴ 140
2
votes
2
replies
1.2k
views
fastq.gz how to split.
fastq.gz split
2.4 years ago by Andy ▴ 140
0
votes
0
replies
1.1k
views
Comment: Comment: How to deal with SRA file without .SRA
2.4 years ago by Andy ▴ 140
0
votes
2
replies
1.1k
views
How to deal with SRA file without .SRA
SRA
2.4 years ago by Andy ▴ 140
0
votes
1
reply
926
views
Integrate RDS files
integration
2.4 years ago by Andy ▴ 140
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