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410
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annotation before integration
integration annotation
updated 4 months ago by ★ 3.9k • written 4 months ago by ▴ 120
0
votes
0
replies
483
views
scanpy problem for empty cells
scanpy
updated 7 months ago by 43k • written 7 months ago by ▴ 120
1
vote
1
reply
1.3k
views
scanpy add metadata
scanpy metadata
updated 7 months ago by ▴ 120 • written 9 months ago by ▴ 120
1
vote
3
replies
4.0k
views
using scanpy to merge objects
scanpy scRNA-seq single-cell
updated 7 months ago by ▴ 120 • written 10 months ago by ▴ 120
0
votes
0
replies
248
views
Question about relative contribution calculation
relative-contribution
updated 7 months ago by 43k • written 7 months ago by ▴ 120
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0
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970
views
Comment: Comment: Can I using scVI to integrate data, then using R to conduct following analysis?
8 months ago by Andy ▴ 120
2
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3
replies
970
views
Can I using scVI to integrate data, then using R to conduct following analysis?
R python single-cell
8 months ago by Andy ▴ 120
0
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0
replies
430
views
Questions Arising from Using Scanpy for Data Input and scVI for Batch Effect Removal
single scanpy cell scvi
8 months ago by Andy ▴ 120
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0
replies
312
views
How to decide number of features
object number features Seurat of
8 months ago by Andy ▴ 120
0
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0
replies
2.5k
views
Comment: Comment: subset data problem
9 months ago by Andy ▴ 120
0
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0
replies
2.5k
views
Comment: Comment: subset data problem
9 months ago by Andy ▴ 120
0
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0
replies
2.5k
views
Comment: Comment: subset data problem
updated 9 months ago by 141k • written 9 months ago by ▴ 120
1
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8
replies
2.5k
views
subset data problem
R seurat
9 months ago by Andy ▴ 120
0
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1
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1.1k
views
Seurat object problem
Seurat
updated 9 months ago by 82k • written 9 months ago by ▴ 120
2
votes
3
replies
680
views
Integration more than one million cell
scRNA-seq single-cell
updated 4 months ago by 87k • written 9 months ago by ▴ 120
8
votes
7
replies
1.0k
views
new visualization method for dimension reduction technique
dimension-reduction
updated 9 months ago by ★ 27k • written 9 months ago by ▴ 120
0
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1
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1.0k
views
Comment: Comment: new visualization method for dimension reduction technique
9 months ago by Andy ▴ 120
0
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0
replies
1.0k
views
Comment: Comment: new visualization method for dimension reduction technique
9 months ago by Andy ▴ 120
0
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0
replies
1.0k
views
Comment: Comment: new visualization method for dimension reduction technique
9 months ago by Andy ▴ 120
1
vote
1
reply
669
views
Comment: Comment: snakemake and snakefile question.
9 months ago by Andy ▴ 120
2
votes
2
replies
669
views
snakemake and snakefile question.
snakemake
updated 9 months ago by 43k • written 9 months ago by ▴ 120
0
votes
0
replies
1.2k
views
Comment: Comment: vector::reserve error message
9 months ago by Andy ▴ 120
0
votes
1
reply
1.2k
views
Comment: Comment: vector::reserve error message
9 months ago by Andy ▴ 120
0
votes
0
replies
438
views
Comment: Comment: scIB pipeline error
10 months ago by Andy ▴ 120
0
votes
2
replies
1.2k
views
vector::reserve error message (Problem solved)
R
updated 9 months ago by 43k • written 10 months ago by ▴ 120
0
votes
2
replies
438
views
scIB pipeline error
pipeline scib
10 months ago by Andy ▴ 120
0
votes
0
replies
306
views
Comment: Comment: conos error
10 months ago by Andy ▴ 120
0
votes
1
reply
306
views
conos error
conos batch-effect
10 months ago by Andy ▴ 120
0
votes
1
reply
574
views
change gene id to gene name
gene id name
updated 10 months ago by ★ 3.9k • written 10 months ago by ▴ 120
0
votes
0
replies
2.4k
views
Comment: Comment: In Scanpy, how to RDS file and merge it with other Scanpy objects.
10 months ago by Andy ▴ 120
7
votes
2
replies
2.4k
views
In Scanpy, how to RDS file and merge it with other Scanpy objects.
scanpy file RDS
10 months ago by Andy ▴ 120
0
votes
0
replies
356
views
fastMNN problem
fastMNN
updated 10 months ago by 82k • written 10 months ago by ▴ 120
0
votes
0
replies
944
views
Comment: Comment: Merge more than 150 Seurat objects together for further analysis
10 months ago by Andy ▴ 120
0
votes
2
replies
944
views
Merge more than 150 Seurat objects together for further analysis
seurat objects merge
10 months ago by Andy ▴ 120
0
votes
0
replies
536
views
Comment: Comment: Batch correction score and bio conservation score how to get those?
10 months ago by Andy ▴ 120
2
votes
2
replies
536
views
Batch correction score and bio conservation score how to get those?
Batch-correction bio-conservation
updated 10 months ago by 43k • written 10 months ago by ▴ 120
0
votes
0
replies
2.8k
views
Comment: Comment: Merge really large amount of Seurat objects
10 months ago by Andy ▴ 120
2
votes
3
replies
2.8k
views
Merge really large amount of Seurat objects
Seurat
10 months ago by Andy ▴ 120
0
votes
1
reply
2.8k
views
Comment: Comment: Merge really large amount of Seurat objects
updated 10 months ago by 141k • written 10 months ago by ▴ 120
0
votes
1
reply
510
views
install SCP problem
SCP
updated 10 months ago by 82k • written 10 months ago by ▴ 120
0
votes
0
replies
4.0k
views
Comment: Comment: using scanpy to merge objects
10 months ago by Andy ▴ 120
0
votes
1
reply
4.0k
views
Comment: Comment: using scanpy to merge objects
10 months ago by Andy ▴ 120
1
vote
1
reply
586
views
How to extract one Seurat object from an RDS file.
seurat object
updated 10 months ago by ★ 16k • written 10 months ago by ▴ 120
1
vote
3
replies
602
views
What is the best integration package for large single cell RNA sequencing dataset.
scRNA-seq integration
updated 7 weeks ago by 13k • written 10 months ago by ▴ 120
0
votes
0
replies
487
views
Comment: Comment: Integrate RDS files
10 months ago by Andy ▴ 120
0
votes
0
replies
626
views
Comment: Comment: fastq.gz how to split.
10 months ago by Andy ▴ 120
2
votes
2
replies
626
views
fastq.gz how to split.
fastq.gz split
10 months ago by Andy ▴ 120
0
votes
0
replies
566
views
Comment: Comment: How to deal with SRA file without .SRA
10 months ago by Andy ▴ 120
0
votes
2
replies
566
views
How to deal with SRA file without .SRA
SRA
10 months ago by Andy ▴ 120
0
votes
1
reply
487
views
Integrate RDS files
integration
10 months ago by Andy ▴ 120
112 results • Page 1 of 3
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