Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
1
reply
792
views
annotation before integration
integration annotation
updated 18 months ago by ★ 4.7k • written 18 months ago by ▴ 120
0
votes
0
replies
1.1k
views
scanpy problem for empty cells
scanpy
updated 21 months ago by 45k • written 21 months ago by ▴ 120
1
vote
1
reply
2.6k
views
scanpy add metadata
scanpy metadata
updated 22 months ago by ▴ 120 • written 2.0 years ago by ▴ 120
1
vote
3
replies
9.2k
views
using scanpy to merge objects
scanpy scRNA-seq single-cell
updated 22 months ago by ▴ 120 • written 2.0 years ago by ▴ 120
0
votes
0
replies
411
views
Question about relative contribution calculation
relative-contribution
updated 22 months ago by 45k • written 22 months ago by ▴ 120
2
votes
3
replies
1.7k
views
Can I using scVI to integrate data, then using R to conduct following analysis?
R python single-cell
22 months ago by Andy ▴ 120
0
votes
0
replies
695
views
Questions Arising from Using Scanpy for Data Input and scVI for Batch Effect Removal
single scanpy cell scvi
22 months ago by Andy ▴ 120
0
votes
0
replies
648
views
How to decide number of features
object number features Seurat of
23 months ago by Andy ▴ 120
1
vote
8
replies
5.6k
views
subset data problem
R seurat
23 months ago by Andy ▴ 120
0
votes
1
reply
1.9k
views
Seurat object problem
Seurat
updated 23 months ago by 88k • written 23 months ago by ▴ 120
2
votes
3
replies
1.5k
views
Integration more than one million cell
scRNA-seq single-cell
updated 18 months ago by 89k • written 23 months ago by ▴ 120
8
votes
7
replies
2.4k
views
new visualization method for dimension reduction technique
dimension-reduction
updated 24 months ago by ★ 29k • written 24 months ago by ▴ 120
2
votes
2
replies
1.0k
views
snakemake and snakefile question.
snakemake
updated 24 months ago by 45k • written 24 months ago by ▴ 120
0
votes
2
replies
2.6k
views
vector::reserve error message (Problem solved)
R
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 120
0
votes
2
replies
802
views
scIB pipeline error
pipeline scib
2.0 years ago by Andy ▴ 120
0
votes
1
reply
591
views
conos error
conos batch-effect
2.0 years ago by Andy ▴ 120
0
votes
1
reply
956
views
change gene id to gene name
gene id name
updated 2.0 years ago by ★ 4.7k • written 2.0 years ago by ▴ 120
7
votes
2
replies
4.9k
views
In Scanpy, how to RDS file and merge it with other Scanpy objects.
scanpy file RDS
2.0 years ago by Andy ▴ 120
0
votes
0
replies
570
views
fastMNN problem
fastMNN
updated 2.0 years ago by 88k • written 2.0 years ago by ▴ 120
0
votes
2
replies
1.6k
views
Merge more than 150 Seurat objects together for further analysis
seurat objects merge
2.0 years ago by Andy ▴ 120
2
votes
2
replies
963
views
Batch correction score and bio conservation score how to get those?
Batch-correction bio-conservation
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 120
2
votes
3
replies
4.6k
views
Merge really large amount of Seurat objects
Seurat
2.0 years ago by Andy ▴ 120
0
votes
1
reply
722
views
install SCP problem
SCP
updated 2.0 years ago by 88k • written 2.0 years ago by ▴ 120
1
vote
1
reply
835
views
How to extract one Seurat object from an RDS file.
seurat object
updated 2.1 years ago by ★ 19k • written 2.1 years ago by ▴ 120
1
vote
3
replies
1.4k
views
What is the best integration package for large single cell RNA sequencing dataset.
scRNA-seq integration
updated 16 months ago by 13k • written 2.1 years ago by ▴ 120
2
votes
2
replies
1.0k
views
fastq.gz how to split.
fastq.gz split
2.1 years ago by Andy ▴ 120
0
votes
2
replies
925
views
How to deal with SRA file without .SRA
SRA
2.1 years ago by Andy ▴ 120
0
votes
1
reply
779
views
Integrate RDS files
integration
2.1 years ago by Andy ▴ 120
2
votes
2
replies
1.8k
views
integrate single cell RNA sequencing data
scRNAseq single-cell
updated 2.1 years ago by 3.3k • written 2.1 years ago by ▴ 120
0
votes
1
reply
781
views
Liger find a sub cluster under one cluster
liger
2.2 years ago by Andy ▴ 120
0
votes
1
reply
831
views
Scanpy and SCVI help.
Scanpy scVI
2.2 years ago by Andy ▴ 120
1
vote
6
replies
2.8k
views
SCVI problem
SCVI
2.2 years ago by Andy ▴ 120
4
votes
6
replies
2.3k
views
remove batch effect
harmony
updated 21 months ago by ▴ 260 • written 2.3 years ago by ▴ 120
0
votes
1
reply
880
views
pyscenic cannot mapped to the feather file
pyscenic
2.3 years ago by Andy ▴ 120
0
votes
0
replies
421
views
pyscenic feather file
pyscenic
2.3 years ago by Andy ▴ 120
0
votes
1
reply
686
views
pyscenic
pyscenic scenic
2.3 years ago by Andy ▴ 120
2
votes
5
replies
14k
views
install seurat 4.0.3
Seurat
2.3 years ago by Andy ▴ 120
0
votes
2
replies
973
views
cellranger outcome
fastq bam cellranger
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 120
4
votes
11
replies
2.8k
views
Paired layout, but one fastq file
fastq
updated 15 months ago by 152k • written 2.3 years ago by ▴ 120
2
votes
2
replies
816
views
fastq file for GSE151671
fastq
2.3 years ago by Andy ▴ 120
0
votes
3
replies
1.7k
views
cellchat probelm
cellchat R
2.4 years ago by Andy ▴ 120
0
votes
0
replies
1.7k
views
harmony output
Harmony R
2.4 years ago by Andy ▴ 120
2
votes
2
replies
943
views
R bug during normalize
seurat R
2.4 years ago by Andy ▴ 120
1
vote
6
replies
1.3k
views
drawing Venn graph
Venn R
2.6 years ago by Andy ▴ 120
0
votes
1
reply
769
views
Trouble to find identity
seurat R
updated 2.6 years ago by 152k • written 2.6 years ago by ▴ 120
0
votes
2
replies
2.4k
views
find top expressed genes under one specific object
seurat R
2.6 years ago by Andy ▴ 120
2
votes
6
replies
4.4k
views
dot plot split by issue
dotplot seurat R
2.6 years ago by Andy ▴ 120
0
votes
0
replies
578
views
subcluster annotation problem
subcluster. Seurat R
2.6 years ago by Andy ▴ 120
2
votes
2
replies
2.9k
views
Seurat dotPlot code issue: Error in `levels<-`(`*tmp*`, value = as.character(levels))
seurat R
updated 2.6 years ago by 12k • written 2.6 years ago by ▴ 120
2
votes
2
replies
936
views
How can I visualize my single-cell data?
single-cell rna R
updated 2.6 years ago by 12k • written 2.6 years ago by ▴ 120
53 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6