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2
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0
replies
2.3k
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Comment: C: Plot read density across a normalized gene model for its each exon/intron length
5.4 years ago by kashiff007 ★ 1.9k
2
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0
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2.3k
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Comment: C: Plot read density across a normalized gene model for its each exon/intron length
5.4 years ago by kashiff007 ★ 1.9k
1
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0
replies
35k
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Comment: C: Converstion of BED with scores into bigWig
updated 5.5 years ago by 45k • written 7.7 years ago by ★ 1.9k
1
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0
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3.7k
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Comment: C: Error :creating a custom BS genome pakage for Olea Europeae
5.6 years ago by kashiff007 ★ 1.9k
4
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2
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8.0k
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Answer: A: deseq2 or edgeR
5.7 years ago by kashiff007 ★ 1.9k
1
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1
reply
1.4k
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Comment: C: Reporting methylation of both Cs and Gs, or only Cs
5.7 years ago by kashiff007 ★ 1.9k
7
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5
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1.4k
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Reporting methylation of both Cs and Gs, or only Cs
Methylation bismark BS-seq next-gen sequencing
updated 5.7 years ago by 105k • written 5.7 years ago by ★ 1.9k
6
votes
1
reply
4.5k
views
Answer: A: plot error x y length difference
updated 5.8 years ago by 45k • written 5.8 years ago by ★ 1.9k
1
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1
reply
4.5k
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Comment: C: plot error x y length difference
5.8 years ago by kashiff007 ★ 1.9k
1
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1
reply
2.0k
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Comment: C: macs14 replicates treatment and final wiggle peak files
6.0 years ago by kashiff007 ★ 1.9k
1
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1
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2.0k
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Comment: C: macs14 replicates treatment and final wiggle peak files
6.0 years ago by kashiff007 ★ 1.9k
9
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5
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2.0k
views
macs14 replicates treatment and final wiggle peak files
ChIP-Seq wig-file replicates macs14
updated 6.0 years ago by 12k • written 6.0 years ago by ★ 1.9k
6
votes
3
replies
1.2k
views
Faster way to run macs14
ChIP-Seq macs14 multicore multithread
6.0 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
951
views
Merge MNase-seq bam files from replicates.
next-gen MNase-seq bam-files merge replicates
6.2 years ago by kashiff007 ★ 1.9k
3
votes
1
reply
5.9k
views
Answer: A: How to distinguish if a gene is a paralogue or an isoform?
6.2 years ago by kashiff007 ★ 1.9k
1
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0
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2.0k
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Comment: C: Number of discovered genes in genome does not correspond with published annotati
6.2 years ago by kashiff007 ★ 1.9k
1
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1
reply
2.0k
views
Comment: C: Number of discovered genes in genome does not correspond with published annotati
6.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
2.0k
views
Comment: A: Number of discovered genes in genome does not correspond with published annotati
6.2 years ago by kashiff007 ★ 1.9k
11
votes
2
replies
3.9k
views
Convert Fasta format to MEME-motif format
MEME-suite fasta motif FIMO
updated 2.2 years ago by 45k • written 6.2 years ago by ★ 1.9k
3
votes
0
replies
3.9k
views
Answer: A: Convert Fasta format to MEME-motif format
6.2 years ago by kashiff007 ★ 1.9k
2
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0
replies
7.2k
views
Answer: A: Is There Is Tool For Variable Tandem Repeats Finding?
6.2 years ago by kashiff007 ★ 1.9k
1
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0
replies
1.4k
views
Comment: C: How to subset S4 list with 5 Granges elements
6.2 years ago by kashiff007 ★ 1.9k
4
votes
0
replies
3.9k
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Comment: C: Multiple sequence alignment and visualisation for bacterial genomes
6.2 years ago by kashiff007 ★ 1.9k
4
votes
0
replies
3.9k
views
Answer: A: Convert Fasta format to MEME-motif format
6.2 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
4.9k
views
Comment: C: Finding Minisatellite Repeat Motives In Dna
7.0 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
12k
views
Comment: C: How to extract bigWig signal for a given bed file?
7.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
12k
views
Comment: C: How to extract bigWig signal for a given bed file?
7.2 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
12k
views
Comment: C: How to extract bigWig signal for a given bed file?
7.2 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
2.4k
views
Answer: A: Binning Exon And Plotting Read Densities (Bed Regions) With In And Around Binned
7.5 years ago by kashiff007 ★ 1.9k
2
votes
2
replies
8.6k
views
Comment: C: MCScanX result problem
7.6 years ago by kashiff007 ★ 1.9k
1
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1
reply
8.6k
views
Comment: C: MCScanX result problem
7.7 years ago by kashiff007 ★ 1.9k
1
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0
replies
1.7k
views
Comment: C: Compare mus musculus and mus spretus genome structure annotation
7.7 years ago by kashiff007 ★ 1.9k
1
vote
1
reply
8.6k
views
Comment: C: MCScanX result problem
7.7 years ago by kashiff007 ★ 1.9k
6
votes
0
replies
7.5k
views
Answer: A: chrom.sizes computed locally
7.7 years ago by kashiff007 ★ 1.9k
8
votes
2
replies
3.1k
views
fixedStep or variableStep Smoothening wig file
wig file wiggle smoothing
updated 7.7 years ago by 36k • written 7.7 years ago by ★ 1.9k
3
votes
1
reply
2.2k
views
Answer: A: Combining two columns in a tab-delimited file where there is a zero in one
7.7 years ago by kashiff007 ★ 1.9k
2
votes
1
reply
8.6k
views
Answer: A: MCScanX result problem
7.7 years ago by kashiff007 ★ 1.9k
1
vote
0
replies
5.5k
views
Answer: A: Question: Converting Blast Results/Output to FASTA format
7.7 years ago by kashiff007 ★ 1.9k
4
votes
1
reply
2.0k
views
How to generate pair-wise alignments for all the orthologous gene pairs at once?
alignment sequence blast
10.2 years ago by kashiff007 ★ 1.9k
3
votes
0
replies
2.1k
views
Cufflinks generating multi-transcripts
Assembly RNA-Seq
updated 10.8 years ago by 20 • written 10.9 years ago by ★ 1.9k
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