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0
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351
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Comment: Comment: install of genomestudio 2.0.5 in aws
4 months ago by bioguy24 ▴ 230
1
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2
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351
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install of genomestudio 2.0.5 in aws
illumina
4 months ago by bioguy24 ▴ 230
0
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0
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865
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Comment: Comment: csv to custom manifest file
12 months ago by bioguy24 ▴ 230
0
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4
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865
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csv to custom manifest file
illumina
12 months ago by bioguy24 ▴ 230
0
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0
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652
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Comment: Comment: convert illumina manifest to csv
13 months ago by bioguy24 ▴ 230
1
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2
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652
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convert illumina manifest to csv
illumina
updated 13 months ago by 13k • written 13 months ago by ▴ 230
8
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6
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2.7k
views
bwa 0.7.18 download to fix compile fail with GCC 10
bwa
updated 4 weeks ago by 3.0k • written 2.0 years ago by ▴ 230
0
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1
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2.7k
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Comment: Comment: bwa 0.7.18 download to fix compile fail with GCC 10
2.0 years ago by bioguy24 ▴ 230
6
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15
replies
2.5k
views
processing in strelka2 with multiples bam file in directory
strelka2
updated 2.4 years ago by ▴ 70 • written 4.4 years ago by ▴ 230
0
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1
reply
2.2k
views
STAR-Fusion error while executing and produces some intermediates files
Star-fusion
updated 3.4 years ago by 88k • written 4.9 years ago by ▴ 230
1
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0
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15k
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Answer: A: vcf to bam
updated 3.7 years ago by 43k • written 8.6 years ago by ▴ 230
1
vote
1
reply
1.4k
views
Haplotypecaller indel realignment
haplotypecaller
4.3 years ago by bioguy24 ▴ 230
0
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0
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910
views
Comment: C: sugesstions to optimize an abra2 command
4.3 years ago by bioguy24 ▴ 230
1
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2
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910
views
sugesstions to optimize an abra2 command
abra2
4.3 years ago by bioguy24 ▴ 230
0
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0
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571
views
q30 using multicovergebam greater the target length
multibam coverage
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 230
0
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1
reply
3.7k
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Comment: C: How can I compare two columns of a two VCF files
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 230
0
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1
reply
2.5k
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Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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1
reply
2.5k
views
Comment: C: processing in strelka2 with multiples bam file in directory
4.4 years ago by bioguy24 ▴ 230
0
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0
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3.5k
views
Comment: C: Need recommendation for a virtual machine or linux cluster for ngs analysis
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 230
0
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0
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778
views
calculate per base depth and q30 reads from bam using a bed
samtools depth and q30
4.5 years ago by bioguy24 ▴ 230
0
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0
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2.9k
views
Comment: A: picard tools error in strand field
updated 4.5 years ago by 43k • written 8.5 years ago by ▴ 230
0
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0
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2.9k
views
Comment: C: picard tools error in strand field
updated 4.5 years ago by 43k • written 8.5 years ago by ▴ 230
2
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2
replies
4.1k
views
bedtools 2.25 vs bedtools2.20 coverageBed output not consistent
ngs bedtools
updated 20 months ago by 43k • written 8.7 years ago by ▴ 230
0
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1
reply
5.3k
views
Comment: C: bowtie2 install on ubuntu
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 230
0
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1
reply
5.3k
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Comment: Comment: bowtie2 install on ubuntu
updated 19 months ago by 43k • written 8.8 years ago by ▴ 230
0
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0
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783
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Comment: C: prepare file for depth of coverage
4.7 years ago by bioguy24 ▴ 230
1
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2
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783
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prepare file for depth of coverage
depth of coverage
4.7 years ago by bioguy24 ▴ 230
0
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2
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2.1k
views
targets in a bed at or above a coverage
bed bam
updated 14 months ago by 43k • written 4.9 years ago by ▴ 230
0
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0
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1.1k
views
Comment: C: report every base in a bam using bed as input
5.0 years ago by bioguy24 ▴ 230
3
votes
2
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1.1k
views
report every base in a bam using bed as input
samtools bcftools
updated 5.0 years ago by 161k • written 5.0 years ago by ▴ 230
1
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0
replies
1.4k
views
Answer: A: compare two columns of two files
5.1 years ago by bioguy24 ▴ 230
0
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0
replies
1.9k
views
Comment: C: correct mark duplicated error using python and pysam to filter out secondary ali
5.1 years ago by bioguy24 ▴ 230
0
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0
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6.6k
views
Answer: A: Extract gene names from annotated vcf file
5.1 years ago by bioguy24 ▴ 230
0
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1
reply
1.9k
views
correct mark duplicated error using python and pysam to filter out secondary alignments
python pysam
5.1 years ago by bioguy24 ▴ 230
3
votes
4
replies
2.5k
views
error using bqsr and incompatible contigs
gatk bqsr
updated 5.3 years ago by 20 • written 5.8 years ago by ▴ 230
4
votes
5
replies
5.4k
views
samtools covert to bam, sort and index all gz.sam
samtools parellel
updated 5.4 years ago by ★ 3.8k • written 5.4 years ago by ▴ 230
1
vote
2
replies
2.9k
views
using vcftools to add gene name to vcf file
vcftools
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 230
1
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2
replies
3.0k
views
add gene name from bed file to vcf in vcftools
vcftools
updated 22 months ago by 43k • written 8.2 years ago by ▴ 230
0
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0
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2.9k
views
Comment: C: using vcftools to add gene name to vcf file
updated 5.7 years ago by 43k • written 8.2 years ago by ▴ 230
0
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0
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3.0k
views
Comment: Comment: add gene name from bed file to vcf in vcftools
updated 22 months ago by 43k • written 8.2 years ago by ▴ 230
0
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0
replies
2.3k
views
Comment: C: gatk vqsr --recal-file error
5.8 years ago by bioguy24 ▴ 230
2
votes
2
replies
2.3k
views
gatk vqsr --recal-file error
gatk vqsr
updated 5.8 years ago by 5.7k • written 5.8 years ago by ▴ 230
0
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0
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2.5k
views
Comment: C: error using bqsr and incompatible contigs
5.8 years ago by bioguy24 ▴ 230
0
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0
replies
3.7k
views
Comment: C: GATK MarkDuplicates output and bam
5.8 years ago by bioguy24 ▴ 230
0
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1
reply
3.7k
views
Comment: C: GATK MarkDuplicates output and bam
5.8 years ago by bioguy24 ▴ 230
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