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Is it reasonable to keep only protein-coding genes in highly variable features in scRNA-seq data?
scRNA-seq
updated 18 days ago by 90k • written 19 days ago by ▴ 50
0
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1
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750
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Comment: Comment: scRNAseq analysis with a few samples (n=2 per group)
19 days ago by carolofharvest ▴ 50
3
votes
1
reply
492
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1 vs 1 DEG analysis in scrna seq data
DEG
updated 29 days ago by 90k • written 4 weeks ago by ▴ 50
2
votes
1
reply
492
views
FACS quality control based on size and doublet detection in scRNA-seq
single-cell rna-detection FACS doublet scRNA-seq
updated 29 days ago by 45k • written 4 weeks ago by ▴ 50
0
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1
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1.2k
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Comment: Comment: SlingShot and Subsetting data
7 months ago by carolofharvest ▴ 50
2
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5
replies
1.2k
views
SlingShot and Subsetting data
scrna slingshot trajectory
updated 7 months ago by ★ 19k • written 7 months ago by ▴ 50
0
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0
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562
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Comment: Comment: How to plot LMER estimate values in heatmap ?
7 months ago by carolofharvest ▴ 50
0
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2
replies
562
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How to plot LMER estimate values in heatmap ?
cell scRNAseq TF lmer transcription
7 months ago by carolofharvest ▴ 50
0
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0
replies
456
views
Anti-ligand , receptor blocking and cell cell interaction analysis
cellchat cell nichenet single
9 months ago by carolofharvest ▴ 50
0
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0
replies
1.2k
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Comment: Comment: decoupleR & Transcription Factory Activity Inference: pvalue or padj?
10 months ago by carolofharvest ▴ 50
0
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6
replies
1.9k
views
What should I do if death cell counts and types biologically important in my single cell data?
scRNA cell-death single-cell
updated 11 months ago by 22k • written 14 months ago by ▴ 50
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0
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934
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Answer: Answer: How Can Pathway Analysis Methods Account for Genes with Different Activation Rol
11 months ago by carolofharvest ▴ 50
1
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0
replies
991
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Answer: Answer: scRNA-seq from cell count matrix and DESeq2
11 months ago by carolofharvest ▴ 50
0
votes
1
reply
772
views
How many genes is required for ORA analysis?
ora deseq single-cell
updated 11 months ago by 45k • written 11 months ago by ▴ 50
3
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1
reply
837
views
scRNA seq dissimilarity plot
anosim scRNA-seq dissimilarity
updated 12 months ago by 6.5k • written 12 months ago by ▴ 50
1
vote
1
reply
524
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Good Dotplots for homogenous data (Seurat)
seurat dotplot
updated 12 months ago by ▴ 870 • written 12 months ago by ▴ 50
0
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1
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1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by carolofharvest ▴ 50
0
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1
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1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by carolofharvest ▴ 50
0
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0
replies
1.4k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
13 months ago by carolofharvest ▴ 50
0
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7
replies
1.4k
views
ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
single-cell
updated 13 months ago by ★ 7.8k • written 13 months ago by ▴ 50
1
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1
reply
591
views
How to find overlapping regions of a gene and 18s rRNA sequences for mouse
blast
updated 13 months ago by 154k • written 13 months ago by ▴ 50
0
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0
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396
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Keep seeing same degs everytime after filtering and clustering (scRNA)
single-cell
updated 13 months ago by 45k • written 13 months ago by ▴ 50
0
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1
reply
722
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Noise confounding genes in single cell data
single-cell
updated 13 months ago by 45k • written 13 months ago by ▴ 50
0
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2
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1.9k
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
14 months ago by carolofharvest ▴ 50
1
vote
2
replies
973
views
Setting a threshold on gene expression for subsetting (scRNA-seq)
scRNA-seq
updated 17 months ago by 4.8k • written 17 months ago by ▴ 50
0
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0
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727
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Comment: Comment: How are score_weights calculated in this code?
18 months ago by carolofharvest ▴ 50
0
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2
replies
727
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How are score_weights calculated in this code?
single-cell
18 months ago by carolofharvest ▴ 50
0
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1
reply
4.2k
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Comment: Comment: High Malat-1 expression in single cell data
18 months ago by carolofharvest ▴ 50
0
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1
reply
4.2k
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Comment: Comment: High Malat-1 expression in single cell data
18 months ago by carolofharvest ▴ 50
0
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0
replies
1.0k
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Comment: Comment: Highest variable features in single cell data
18 months ago by carolofharvest ▴ 50
0
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2
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4.2k
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Comment: Comment: High Malat-1 expression in single cell data
18 months ago by carolofharvest ▴ 50
4
votes
2
replies
1.3k
views
Analysis of intronic reads included scRNA-seq data
single-cell
updated 18 months ago by 45k • written 18 months ago by ▴ 50
13
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14
replies
4.2k
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High Malat-1 expression in single cell data
single-cell
updated 18 months ago by ▴ 40 • written 18 months ago by ▴ 50
0
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1
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4.2k
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Comment: Comment: High Malat-1 expression in single cell data
18 months ago by carolofharvest ▴ 50
0
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0
replies
4.2k
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Comment: Comment: High Malat-1 expression in single cell data
18 months ago by carolofharvest ▴ 50
0
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1
reply
1.0k
views
Comment: Comment: Highest variable features in single cell data
18 months ago by carolofharvest ▴ 50
0
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4
replies
1.0k
views
Highest variable features in single cell data
single-cell
18 months ago by carolofharvest ▴ 50
0
votes
1
reply
692
views
Could you please assist in identifying this cluster?
single-cell
updated 19 months ago by 45k • written 19 months ago by ▴ 50
0
votes
2
replies
775
views
Should I apply doublet detection for each pool seperately?
scRNA-seq doublets scdbfinder
updated 2.0 years ago by ★ 3.1k • written 2.0 years ago by ▴ 50
0
votes
1
reply
660
views
Best automatic cell annotation tool for mouse immune single cell data?
scRNA-seq Mouse
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 50
0
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0
replies
1.3k
views
Comment: Comment: About scdbfinder
2.2 years ago by carolofharvest ▴ 50
3
votes
3
replies
1.3k
views
About scdbfinder
scRNA-seq doublets scdbfinder
2.2 years ago by carolofharvest ▴ 50
0
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1
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4.0k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.2 years ago by carolofharvest ▴ 50
1
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8
replies
4.0k
views
Negative Expression in RNA Assay on Dot Plot After SCT Transform
scttransform scrnaseq merge Normalization scaledata
updated 2.2 years ago by ★ 1.8k • written 2.2 years ago by ▴ 50
0
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1
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4.0k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.2 years ago by carolofharvest ▴ 50
0
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1
reply
4.0k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.2 years ago by carolofharvest ▴ 50
2
votes
1
reply
725
views
emptyDrops generates different results
DropletUtils emptyDrops scRNA-seq
updated 2.5 years ago by 13k • written 2.5 years ago by ▴ 50
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