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Comment: Comment: SlingShot and Subsetting data
6 months ago by carolofharvest ▴ 50
2
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5
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1.0k
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SlingShot and Subsetting data
scrna slingshot trajectory
updated 6 months ago by ★ 19k • written 6 months ago by ▴ 50
0
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0
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471
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Comment: Comment: How to plot LMER estimate values in heatmap ?
6 months ago by carolofharvest ▴ 50
0
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2
replies
471
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How to plot LMER estimate values in heatmap ?
cell scRNAseq TF lmer transcription
6 months ago by carolofharvest ▴ 50
0
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0
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352
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Anti-ligand , receptor blocking and cell cell interaction analysis
cellchat cell nichenet single
8 months ago by carolofharvest ▴ 50
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0
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1.2k
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Comment: Comment: decoupleR & Transcription Factory Activity Inference: pvalue or padj?
9 months ago by carolofharvest ▴ 50
0
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6
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1.7k
views
What should I do if death cell counts and types biologically important in my single cell data?
scRNA cell-death single-cell
updated 9 months ago by 22k • written 12 months ago by ▴ 50
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0
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826
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Answer: Answer: How Can Pathway Analysis Methods Account for Genes with Different Activation Rol
9 months ago by carolofharvest ▴ 50
1
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0
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888
views
Answer: Answer: scRNA-seq from cell count matrix and DESeq2
10 months ago by carolofharvest ▴ 50
0
votes
1
reply
686
views
How many genes is required for ORA analysis?
ora deseq single-cell
updated 10 months ago by 45k • written 10 months ago by ▴ 50
3
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1
reply
779
views
scRNA seq dissimilarity plot
anosim scRNA-seq dissimilarity
updated 11 months ago by 6.5k • written 11 months ago by ▴ 50
1
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1
reply
453
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Good Dotplots for homogenous data (Seurat)
seurat dotplot
updated 11 months ago by ▴ 820 • written 11 months ago by ▴ 50
0
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1
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1.3k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
12 months ago by carolofharvest ▴ 50
0
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1
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1.3k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
12 months ago by carolofharvest ▴ 50
0
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0
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1.3k
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Comment: Comment: ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
12 months ago by carolofharvest ▴ 50
0
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7
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1.3k
views
ncRNA, pseudogenes and lncRNA genes in highly variable features ( scRNA)
single-cell
updated 12 months ago by ★ 7.7k • written 12 months ago by ▴ 50
1
vote
1
reply
532
views
How to find overlapping regions of a gene and 18s rRNA sequences for mouse
blast
updated 12 months ago by 154k • written 12 months ago by ▴ 50
0
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0
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371
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Keep seeing same degs everytime after filtering and clustering (scRNA)
single-cell
updated 12 months ago by 45k • written 12 months ago by ▴ 50
0
votes
1
reply
685
views
Noise confounding genes in single cell data
single-cell
updated 12 months ago by 45k • written 12 months ago by ▴ 50
0
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2
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1.7k
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Comment: Comment: What should I do if death cell counts and types biologically important in my sin
12 months ago by carolofharvest ▴ 50
1
vote
2
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900
views
Setting a threshold on gene expression for subsetting (scRNA-seq)
scRNA-seq
updated 16 months ago by 4.8k • written 16 months ago by ▴ 50
0
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0
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679
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Comment: Comment: How are score_weights calculated in this code?
16 months ago by carolofharvest ▴ 50
0
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2
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679
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How are score_weights calculated in this code?
single-cell
16 months ago by carolofharvest ▴ 50
0
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1
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3.9k
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Comment: Comment: High Malat-1 expression in single cell data
16 months ago by carolofharvest ▴ 50
0
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1
reply
3.9k
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Comment: Comment: High Malat-1 expression in single cell data
16 months ago by carolofharvest ▴ 50
0
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0
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957
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Comment: Comment: Highest variable features in single cell data
16 months ago by carolofharvest ▴ 50
0
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2
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3.9k
views
Comment: Comment: High Malat-1 expression in single cell data
17 months ago by carolofharvest ▴ 50
4
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2
replies
1.1k
views
Analysis of intronic reads included scRNA-seq data
single-cell
updated 17 months ago by 45k • written 17 months ago by ▴ 50
13
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14
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3.9k
views
High Malat-1 expression in single cell data
single-cell
updated 16 months ago by ▴ 40 • written 17 months ago by ▴ 50
0
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1
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3.9k
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Comment: Comment: High Malat-1 expression in single cell data
17 months ago by carolofharvest ▴ 50
0
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0
replies
3.9k
views
Comment: Comment: High Malat-1 expression in single cell data
17 months ago by carolofharvest ▴ 50
0
votes
1
reply
957
views
Comment: Comment: Highest variable features in single cell data
17 months ago by carolofharvest ▴ 50
0
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4
replies
957
views
Highest variable features in single cell data
single-cell
16 months ago by carolofharvest ▴ 50
0
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1
reply
644
views
Could you please assist in identifying this cluster?
single-cell
updated 17 months ago by 45k • written 17 months ago by ▴ 50
0
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2
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724
views
Should I apply doublet detection for each pool seperately?
scRNA-seq doublets scdbfinder
updated 23 months ago by ★ 3.1k • written 23 months ago by ▴ 50
0
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1
reply
611
views
Best automatic cell annotation tool for mouse immune single cell data?
scRNA-seq Mouse
updated 23 months ago by 45k • written 23 months ago by ▴ 50
0
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0
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1.1k
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Comment: Comment: About scdbfinder
2.1 years ago by carolofharvest ▴ 50
3
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3
replies
1.1k
views
About scdbfinder
scRNA-seq doublets scdbfinder
2.1 years ago by carolofharvest ▴ 50
0
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1
reply
3.7k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.1 years ago by carolofharvest ▴ 50
1
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8
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3.7k
views
Negative Expression in RNA Assay on Dot Plot After SCT Transform
scttransform scrnaseq merge Normalization scaledata
updated 2.1 years ago by ★ 1.7k • written 2.1 years ago by ▴ 50
0
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1
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3.7k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.1 years ago by carolofharvest ▴ 50
0
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1
reply
3.7k
views
Comment: Comment: Negative Expression in RNA Assay on Dot Plot After SCT Transform
2.1 years ago by carolofharvest ▴ 50
2
votes
1
reply
678
views
emptyDrops generates different results
DropletUtils emptyDrops scRNA-seq
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 50
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