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6
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6
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3.4k
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Looking for human reference genome with ancestral SNP alleles
hg38 genome Assembly SNP Ensembl
updated 2.5 years ago by • 0 • written 5.4 years ago by ▴ 110
0
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1
reply
5.4k
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Comment: C: Problem with Haploview loading of files from latest (Sept 15-17 2014) update to
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 110
0
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0
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15k
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Comment: C: How To Extract Random Snps From Whole Genome Data?
updated 4.7 years ago by 43k • written 9.5 years ago by ▴ 110
5
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4
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1.7k
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Ensembl variation ancestral allele data
ancestral SNP Ensembl
updated 5.4 years ago by 23k • written 5.4 years ago by ▴ 110
0
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0
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1.7k
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Comment: C: Ensembl variation ancestral allele data
5.4 years ago by Scott ▴ 110
0
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0
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3.4k
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Comment: C: Looking for human reference genome with ancestral SNP alleles
5.4 years ago by Scott ▴ 110
0
votes
1
reply
3.4k
views
Comment: C: Looking for human reference genome with ancestral SNP alleles
5.4 years ago by Scott ▴ 110
0
votes
0
replies
1.4k
views
Comment: C: HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calcula
5.4 years ago by Scott ▴ 110
0
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0
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1.4k
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Comment: C: HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calcula
5.5 years ago by Scott ▴ 110
1
vote
5
replies
1.4k
views
HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calculator
SNP LD ensembl
updated 5.5 years ago by 23k • written 5.5 years ago by ▴ 110
1
vote
5
replies
2.2k
views
Correct for confounding variable (variability in knockdown efficiency) in paired t-test for change in gene expression
statistics t-test gene qPCR ANCOVA
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 110
0
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0
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2.2k
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Comment: C: Correct for confounding variable (variability in knockdown efficiency) in paired
6.3 years ago by Scott ▴ 110
2
votes
5
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5.4k
views
Problem with Haploview loading of files from latest (Sept 15-17 2014) update to phase 3 release of 1000 Genomes data
ped SNP VCF Haploview 1000Genomes
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
6
votes
6
replies
4.4k
views
Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data: Considerations of singletons vs family trios
1000genomes SNP haploview linkage-disequilibrium
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
0
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0
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11k
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Answer: A: Retrieve Single Vcf From List Of Snp Rs#
7.8 years ago by Scott ▴ 110
1
vote
3
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3.2k
views
calculating LD for SNPs with more than two alleles
LD linkage disequilibrium snps multi-allelic
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
0
replies
21k
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Comment: Comment: remove non biallelic SNPs from ped
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
0
replies
4.4k
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Answer: Answer: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
0
replies
3.2k
views
Comment: Comment: calculating LD for SNPs with more than two alleles
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
0
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0
replies
3.2k
views
Answer: Answer: calculating LD for SNPs with more than two alleles
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
4
votes
1
reply
21k
views
Answer: Answer: remove non biallelic SNPs from ped
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
4
votes
4
replies
7.1k
views
VCFtools LD calculations only for pairs that include a single SNP of interest
SNP LD R^2 linkagedisequilibrium VCFtools
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
1
reply
3.4k
views
Comment: Comment: vcf-concat error "column names do not match"
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
1
reply
3.4k
views
Comment: Comment: vcf-concat error "column names do not match"
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
2
votes
5
replies
3.4k
views
vcf-concat error "column names do not match"
vcf-concat vcftools SNP
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 110
0
votes
0
replies
17k
views
Comment: C: Any Simple Script To Calculate Fst Value Between Populations From Genomewide Snp
9.6 years ago by Scott ▴ 110
1
vote
0
replies
7.1k
views
Answer: Answer: How To Convert A Multisample Vcf To A Format That Can Be Loaded In Haploview?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
0
votes
1
reply
5.4k
views
Answer: Answer: Problem with Haploview loading of files from latest (Sept 15-17 2014) update to
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
0
votes
0
replies
4.4k
views
Comment: Comment: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
0
votes
1
reply
4.4k
views
Comment: Comment: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
0
votes
0
replies
26k
views
Comment: Comment: What Is The Importance Of The Hardy Weinberg Equilibrium In Gwas?
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 110
1
vote
1
reply
26k
views
Comment: C: What Is The Importance Of The Hardy Weinberg Equilibrium In Gwas?
9.6 years ago by Scott ▴ 110
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