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6
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6
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Looking for human reference genome with ancestral SNP alleles
hg38 genome Assembly SNP Ensembl
updated 3.7 years ago by • 0 • written 6.6 years ago by ▴ 110
0
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1
reply
6.0k
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Comment: C: Problem with Haploview loading of files from latest (Sept 15-17 2014) update to
updated 5.7 years ago by 45k • written 10.1 years ago by ▴ 110
0
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0
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17k
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Comment: C: How To Extract Random Snps From Whole Genome Data?
updated 5.9 years ago by 45k • written 10.8 years ago by ▴ 110
5
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4
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2.2k
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Ensembl variation ancestral allele data
ancestral SNP Ensembl
updated 6.6 years ago by 24k • written 6.6 years ago by ▴ 110
0
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0
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2.2k
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Comment: C: Ensembl variation ancestral allele data
6.6 years ago by Scott ▴ 110
0
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0
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4.2k
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Comment: C: Looking for human reference genome with ancestral SNP alleles
6.6 years ago by Scott ▴ 110
0
votes
1
reply
4.2k
views
Comment: C: Looking for human reference genome with ancestral SNP alleles
6.6 years ago by Scott ▴ 110
0
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0
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1.9k
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Comment: C: HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calcula
6.6 years ago by Scott ▴ 110
0
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0
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1.9k
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Comment: C: HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calcula
6.7 years ago by Scott ▴ 110
1
vote
5
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1.9k
views
HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calculator
SNP LD ensembl
updated 6.7 years ago by 24k • written 6.7 years ago by ▴ 110
1
vote
5
replies
2.6k
views
Correct for confounding variable (variability in knockdown efficiency) in paired t-test for change in gene expression
statistics t-test gene qPCR ANCOVA
updated 7.5 years ago by 105k • written 7.5 years ago by ▴ 110
0
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0
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2.6k
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Comment: C: Correct for confounding variable (variability in knockdown efficiency) in paired
7.5 years ago by Scott ▴ 110
2
votes
5
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6.0k
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Problem with Haploview loading of files from latest (Sept 15-17 2014) update to phase 3 release of 1000 Genomes data
ped SNP VCF Haploview 1000Genomes
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
6
votes
6
replies
5.1k
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Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data: Considerations of singletons vs family trios
1000genomes SNP haploview linkage-disequilibrium
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
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0
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12k
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Answer: A: Retrieve Single Vcf From List Of Snp Rs#
9.0 years ago by Scott ▴ 110
1
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3
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3.7k
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calculating LD for SNPs with more than two alleles
LD linkage disequilibrium snps multi-allelic
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
0
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0
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23k
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Comment: Comment: remove non biallelic SNPs from ped
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
0
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0
replies
5.1k
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Answer: Answer: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
0
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0
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3.7k
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Comment: Comment: calculating LD for SNPs with more than two alleles
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
0
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0
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3.7k
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Answer: Answer: calculating LD for SNPs with more than two alleles
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
4
votes
1
reply
23k
views
Answer: Answer: remove non biallelic SNPs from ped
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 110
4
votes
4
replies
7.9k
views
VCFtools LD calculations only for pairs that include a single SNP of interest
SNP LD R^2 linkagedisequilibrium VCFtools
updated 4.3 years ago by 45k • written 10.7 years ago by ▴ 110
0
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1
reply
3.9k
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Comment: Comment: vcf-concat error "column names do not match"
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
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1
reply
3.9k
views
Comment: Comment: vcf-concat error "column names do not match"
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
2
votes
5
replies
3.9k
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vcf-concat error "column names do not match"
vcf-concat vcftools SNP
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
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0
replies
18k
views
Comment: C: Any Simple Script To Calculate Fst Value Between Populations From Genomewide Snp
10.8 years ago by Scott ▴ 110
1
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0
replies
7.8k
views
Answer: Answer: How To Convert A Multisample Vcf To A Format That Can Be Loaded In Haploview?
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
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1
reply
6.0k
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Answer: Answer: Problem with Haploview loading of files from latest (Sept 15-17 2014) update to
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
votes
0
replies
5.1k
views
Comment: Comment: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
votes
1
reply
5.1k
views
Comment: Comment: Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
0
votes
0
replies
27k
views
Comment: Comment: What Is The Importance Of The Hardy Weinberg Equilibrium In Gwas?
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 110
1
vote
1
reply
27k
views
Comment: C: What Is The Importance Of The Hardy Weinberg Equilibrium In Gwas?
10.9 years ago by Scott ▴ 110
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