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Showing :
questions
6
votes
6
replies
3.4k
views
Looking for human reference genome with ancestral SNP alleles
hg38
genome
Assembly
SNP
Ensembl
updated 2.5 years ago by
ram.glez
• 0 • written 5.4 years ago by
Scott
▴ 110
5
votes
4
replies
1.8k
views
Ensembl variation ancestral allele data
ancestral
SNP
Ensembl
updated 5.4 years ago by
Emily
23k • written 5.4 years ago by
Scott
▴ 110
1
vote
5
replies
1.4k
views
HTTP 400 error for select SNPs when using Ensembl Linkage Disequilibrium calculator
SNP
LD
ensembl
updated 5.5 years ago by
Emily
23k • written 5.5 years ago by
Scott
▴ 110
1
vote
5
replies
2.2k
views
Correct for confounding variable (variability in knockdown efficiency) in paired t-test for change in gene expression
statistics
t-test
gene
qPCR
ANCOVA
updated 6.3 years ago by
Devon Ryan
104k • written 6.3 years ago by
Scott
▴ 110
2
votes
5
replies
5.4k
views
Problem with Haploview loading of files from latest (Sept 15-17 2014) update to phase 3 release of 1000 Genomes data
ped
SNP
VCF
Haploview
1000Genomes
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Scott
▴ 110
6
votes
6
replies
4.4k
views
Linkage disequilibrium analysis of EUR populations from 1000 Genomes phase3 data: Considerations of singletons vs family trios
1000genomes
SNP
haploview
linkage-disequilibrium
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Scott
▴ 110
1
vote
3
replies
3.2k
views
calculating LD for SNPs with more than two alleles
LD
linkage disequilibrium
snps
multi-allelic
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
Scott
▴ 110
4
votes
4
replies
7.2k
views
VCFtools LD calculations only for pairs that include a single SNP of interest
SNP
LD
R^2
linkagedisequilibrium
VCFtools
updated 3.1 years ago by
Ram
43k • written 9.5 years ago by
Scott
▴ 110
2
votes
5
replies
3.5k
views
vcf-concat error "column names do not match"
vcf-concat
vcftools
SNP
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Scott
▴ 110
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