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0
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Comment: C: Deseq2 question of a single factor with 3 levels
7.8 years ago by LauferVA 4.8k
0
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1
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5.4k
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Comment: C: Deseq2 question of a single factor with 3 levels
7.8 years ago by LauferVA 4.8k
0
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0
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1.7k
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Comment: C: How to keep a log of columns removed from edited MSA?
7.8 years ago by LauferVA 4.8k
0
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0
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2.3k
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Comment: C: Conditioning association summary statistics using a correlation matrix.
7.9 years ago by LauferVA 4.8k
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0
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2.3k
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Comment: C: Conditioning association summary statistics using a correlation matrix.
7.9 years ago by LauferVA 4.8k
1
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3
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2.3k
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Conditioning association summary statistics using a correlation matrix.
conditional analysis imputation fine-mapping
7.9 years ago by LauferVA 4.8k
0
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0
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1.8k
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Comment: C: Are WGS cohorts with large numbers of global participants (larger than 1kg) publ
8.0 years ago by LauferVA 4.8k
1
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2
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1.8k
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Are WGS cohorts with large numbers of global participants (larger than 1kg) publicly available?
WGS 1000 genomes 1kg
8.0 years ago by LauferVA 4.8k
4
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4
replies
3.9k
views
Best implementation of negative binomial association test for GWAS data?
statistics negative binomial GWAS association
updated 3.6 years ago by 45k • written 10.8 years ago by 4.8k
0
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1
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3.8k
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Comment: C: When to use FPKM over raw counts or vice-versa?
8.2 years ago by LauferVA 4.8k
3
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1
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4.6k
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What makes assigning A/T and G/C SNPs to a strand unreliable if MAF is not near 0.5?
A/T G/C SNP Strand
8.3 years ago by LauferVA 4.8k
0
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0
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4.6k
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Comment: C: What makes assigning A/T and G/C SNPs to a strand unreliable if MAF is not near
8.3 years ago by LauferVA 4.8k
5
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3
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2.9k
views
Methods of classifying, not detecting, structural variation?
SV-annotation-algorithm Structural-variation
updated 3.3 years ago by 45k • written 9.9 years ago by 4.8k
0
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0
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1.5k
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Do imputed variants tend to show weaker, stronger, or the same average association compared to genotyped variants
imputation genotyped SNP GWAS
8.4 years ago by LauferVA 4.8k
0
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0
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1.8k
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Answer: A: SNP tools to infer copy number variations (CNVs)
8.5 years ago by LauferVA 4.8k
0
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1
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2.9k
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Comment: C: QTL mapping vs. Association mapping for bi-parental crosses
8.5 years ago by LauferVA 4.8k
1
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1
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1.8k
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Comment: C: SNP tools to infer copy number variations (CNVs)
8.5 years ago by LauferVA 4.8k
1
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0
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2.8k
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Comment: C: popoolation parallelization problem
8.5 years ago by LauferVA 4.8k
1
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1
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2.8k
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Comment: C: popoolation parallelization problem
8.5 years ago by LauferVA 4.8k
1
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0
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3.5k
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Comment: C: Report haplotype frequencies from a region within a phased vcf file
8.5 years ago by LauferVA 4.8k
1
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0
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3.0k
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Comment: C: Identify recessive conditions from VCF files
8.5 years ago by LauferVA 4.8k
4
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1
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3.0k
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Answer: A: Identify recessive conditions from VCF files
8.5 years ago by LauferVA 4.8k
0
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1
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3.5k
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Comment: C: Report haplotype frequencies from a region within a phased vcf file
8.5 years ago by LauferVA 4.8k
0
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0
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7.6k
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Comment: C: Hypergeometric test for overlapped genes
8.5 years ago by LauferVA 4.8k
1
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1
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1.7k
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Comment: C: SNP data analysis
8.5 years ago by LauferVA 4.8k
2
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1
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4.6k
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Answer: A: Is it more correct to use r2 or D' for selecting SNPs in LD?
8.5 years ago by LauferVA 4.8k
1
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0
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2.6k
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Answer: A: Limiting variants from WGS to GWAS regions to get more significant cis/trans eQT
8.5 years ago by LauferVA 4.8k
0
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0
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1.8k
views
Resources for finding out the allele frequency of a SNV by subpopulation
SNP Allele Frequency MAF subpopulation
8.5 years ago by LauferVA 4.8k
0
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2
replies
2.3k
views
Is it necessary to have all 3 genotypes to report a significant expression quantitative trait locus?
eQTL
updated 8.5 years ago by 20 • written 8.7 years ago by 4.8k
0
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1
reply
2.2k
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Calculating LD between specific alleles even if they are not the minor alleles
linkage disequilibrium matrix calculation
8.6 years ago by LauferVA 4.8k
0
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0
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1.5k
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Estimating epigenetic missing heredity
missing hertability epigenetics
8.6 years ago by LauferVA 4.8k
5
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0
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5.9k
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Answer: A: errors in running smartpca
8.7 years ago by LauferVA 4.8k
0
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0
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5.1k
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Comment: C: question about the impute2 output format
8.7 years ago by LauferVA 4.8k
0
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1
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2.9k
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Comment: C: vcf-annotate not adding annotations
8.7 years ago by LauferVA 4.8k
0
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0
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2.2k
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Comment: C: What is the appropriate approach for CNV and loss of heterozygosity analysis?
8.7 years ago by LauferVA 4.8k
0
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0
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2.8k
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Comment: C: PCR Amplification necessity in RNASeq
8.7 years ago by LauferVA 4.8k
1
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1
reply
8.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
8.7 years ago by LauferVA 4.8k
0
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1
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8.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
8.7 years ago by LauferVA 4.8k
1
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1
reply
8.0k
views
Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
8.7 years ago by LauferVA 4.8k
1
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1
reply
8.0k
views
Answer: A: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
8.7 years ago by LauferVA 4.8k
0
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0
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2.6k
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Comment: C: Adding gene diagram to output from snp.plotter
8.8 years ago by LauferVA 4.8k
0
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1
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2.6k
views
Comment: C: Adding gene diagram to output from snp.plotter
8.8 years ago by LauferVA 4.8k
4
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3
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2.6k
views
Adding gene diagram to output from snp.plotter
LD heatmap gene diagram
updated 8.8 years ago by ▴ 350 • written 8.8 years ago by 4.8k
1
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0
replies
3.2k
views
Locus Zoom issues no error but prints file with no LD information displayed
LocusZoom LD Linkage Disequilibrium
8.8 years ago by LauferVA 4.8k
0
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0
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3.2k
views
Locus Zoom issuing an error in valid.viewport()
locus zoom
8.9 years ago by LauferVA 4.8k
0
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0
replies
1.6k
views
Are there cases in which the association from a GWAS study has been shown to be caused by a SV or CNV?
GWAS CNV causal missing heritablity
9.1 years ago by LauferVA 4.8k
1
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1
reply
5.4k
views
Plink - resolving heterozygous haploid genotypes if an XY chromosome is already assigned in GWAS
Plink GWAS
updated 9.2 years ago by ▴ 10 • written 9.2 years ago by 4.8k
0
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0
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1.9k
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Comment: C: Return the Title and URL of ~100 pubmed queries to a flat file
9.2 years ago by LauferVA 4.8k
1
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3
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1.9k
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Return the Title and URL of ~100 pubmed queries to a flat file
pubmed batch query
9.2 years ago by LauferVA 4.8k
0
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1
reply
1.7k
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Input into GO in such a way as to not receive ambiguous identifier warnings
GO gene symbol HGNC
updated 9.2 years ago by 7.6k • written 9.2 years ago by 4.8k
793 results • Page 14 of 16
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