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Comment: C: How to add a specific character into the specific location of header in fasta fi
10.1 years ago by seta ★ 1.9k
0
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1
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3.9k
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Comment: Comment: How to add a specific character into the specific location of header in fasta fi
updated 3.2 years ago by 45k • written 10.1 years ago by ★ 1.9k
0
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1
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12k
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Comment: C: How to make sure there is no duplicate sequence in a fasta file?
10.2 years ago by seta ★ 1.9k
0
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1
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12k
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Comment: C: How to make sure there is no duplicate sequence in a fasta file?
10.2 years ago by seta ★ 1.9k
0
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0
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1.9k
views
Reduce redundancy of Trinity assembly using MIRA software
Assembly alignment RNA-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
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0
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2.3k
views
Comment: Comment: The best tips for performing local blastx with XML format output
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
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4
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2.3k
views
The best tips for performing local blastx with XML format output
sequence alignment blast XML output
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
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0
replies
2.3k
views
Comment: C: Detecting random distribution of reads in ORF from the assembled transcripts
10.2 years ago by seta ★ 1.9k
0
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2
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2.3k
views
Comment: C: Detecting random distribution of reads in ORF from the assembled transcripts
10.2 years ago by seta ★ 1.9k
0
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7
replies
2.3k
views
Detecting random distribution of reads in ORF from the assembled transcripts
random-distribution Evaluation Assembly ORF
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
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0
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2.3k
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Comment: C: Detecting random distribution of reads in ORF from the assembled transcripts
10.2 years ago by seta ★ 1.9k
0
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5
replies
3.1k
views
why capt3 tool cannot efficiently find the overlapping contigs?
Assembly sequencing RNA-Seq genome
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
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0
replies
1.9k
views
Suggestion for de novo transcriptome assembly of a plant with high heterozygosity
RNA-Seq Assembly sequencing
10.2 years ago by seta ★ 1.9k
0
votes
0
replies
3.0k
views
Comment: Comment: Finding coding and UTR regions for a gene list
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
3
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6
replies
3.0k
views
Finding coding and UTR regions for a gene list
sequencing alignment coding UTR
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
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0
replies
3.0k
views
Comment: Comment: Finding coding and UTR regions for a gene list
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
1
reply
3.0k
views
Comment: Comment: Finding coding and UTR regions for a gene list
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
1
reply
2.3k
views
KEGG annotation results and transcriptome assembly quality
RNA-Seq sequencing blast alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: Comment: Re-naming some sequences header within the fasta file
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
1
vote
4
replies
2.5k
views
Re-naming some sequences header within the fasta file
Assembly sequence
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
1
reply
2.8k
views
Is there any tool to do GO, EC, and KEGG annotation for transcriptome assembly?
Assembly RNA-Seq sequencing alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
5
votes
0
replies
5.0k
views
Answer: A: if i am right to remove the contamination?
10.2 years ago by seta ★ 1.9k
1
vote
0
replies
1.7k
views
Comment: Comment: the lowest trimmed sequence
updated 4.6 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
1
reply
4.1k
views
How to get the full gene name for a gene abbreviation list?
sequence gene genome
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
4
votes
3
replies
3.7k
views
rRNA contamination in poly A-enriched libraries
Assembly alignment RNA-Seq sequencing
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
Trinotate or Annocript for transcriptome assembly annotation?
RNA-Seq sequencing Assembly alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
0
replies
2.1k
views
Comment: C: how to integrate the blastx output into transcriptome assembly?
10.2 years ago by seta ★ 1.9k
1
vote
3
replies
2.1k
views
how to integrate the blastx output into transcriptome assembly?
RNA-Seq sequencing blast alignment
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
0
replies
3.7k
views
Comment: C: rRNA contamination in poly A-enriched libraries
10.2 years ago by seta ★ 1.9k
0
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0
replies
4.5k
views
Comment: C: why different outputs with applying various extracting fasta sequences tool, whi
10.2 years ago by seta ★ 1.9k
0
votes
1
reply
4.5k
views
Comment: C: why different outputs with applying various extracting fasta sequences tool, whi
10.2 years ago by seta ★ 1.9k
0
votes
1
reply
4.5k
views
Comment: Comment: why different outputs with applying various extracting fasta sequences tool, whi
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
1
reply
4.5k
views
Comment: Comment: why different outputs with applying various extracting fasta sequences tool, whi
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
1
vote
12
replies
4.5k
views
why different outputs with applying various extracting fasta sequences tool, which one correct!?
alignment sequencing RNA-Seq
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 1.9k
0
votes
0
replies
3.1k
views
Comment: C: why capt3 tool cannot efficiently find the overlapping contigs?
10.3 years ago by seta ★ 1.9k
0
votes
1
reply
3.1k
views
Comment: C: why capt3 tool cannot efficiently find the overlapping contigs?
10.3 years ago by seta ★ 1.9k
0
votes
1
reply
2.1k
views
Comment: C: extracting unaligned contigs from the blast output
10.3 years ago by seta ★ 1.9k
1
vote
3
replies
2.1k
views
extracting unaligned contigs from the blast output
blast next-gen-sequencing
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
0
replies
2.5k
views
Comment: C: Error with alignReads.pl in Trinity?
10.3 years ago by seta ★ 1.9k
0
votes
0
replies
3.7k
views
Comment: Comment: Is there any tool to convert blastx format from tabular to xml for feeding it to
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
1
reply
1.9k
views
Comment: Comment: Help with homology searching against nr or nt databases using blat
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
3
replies
1.9k
views
Help with homology searching against nr or nt databases using blat
Assembly alignment sequencing RNA-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
0
replies
1.8k
views
Comment: C: How to deal with high percentage of non-specific matching during read mapping on
10.3 years ago by seta ★ 1.9k
0
votes
2
replies
1.8k
views
How to deal with high percentage of non-specific matching during read mapping on Trinity assembly?
RNA-Seq alignment Assembly sequencing
updated 10.3 years ago by 35k • written 10.3 years ago by ★ 1.9k
3
votes
2
replies
3.5k
views
Differential expression analysis at transcript isoform level
RNA-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
1
reply
2.0k
views
why there is small number unique hit in the blastx results of transcriptome assembly?
alignment Assembly blast RNA-Seq
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
0
replies
2.4k
views
Comment: C: Please clear me about these blastx output!!
10.3 years ago by seta ★ 1.9k
0
votes
1
reply
2.4k
views
Comment: Comment: Please clear me about these blastx output!!
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 1.9k
1
vote
5
replies
2.4k
views
Please clear me about these blastx output!!
alignment Assembly sequencing blast
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 1.9k
0
votes
0
replies
2.4k
views
Comment: Comment: Please clear me about these blastx output!!
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 1.9k
868 results • Page 14 of 18
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