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10
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4.0k
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Bedmethyl file format
bedmethyl methylation
updated 6 months ago by • 0 • written 16 months ago by ▴ 20
0
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0
replies
252
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Is there a database with the mode of inheritance for diseases?
diagnostics genotyping allelotyping
9 months ago by njornet ▴ 20
0
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1
reply
873
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Comment: Comment: Where can I download a BED file with exonic regions?
9 months ago by njornet ▴ 20
2
votes
4
replies
873
views
Where can I download a BED file with exonic regions?
exome bed
updated 9 months ago by 166k • written 9 months ago by ▴ 20
0
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1
reply
1.0k
views
Comment: Comment: What does fully overlapping supplementary alignments mean?
10 months ago by njornet ▴ 20
0
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3
replies
1.0k
views
What does fully overlapping supplementary alignments mean?
Alignment nanopore minimap2
updated 10 months ago by 56k • written 10 months ago by ▴ 20
0
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0
replies
396
views
Is this phasing result normal?
haplotyping sequencing phasing nanopore
11 months ago by njornet ▴ 20
0
votes
0
replies
762
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Comment: Comment: Restrictive alignment with minimap2
12 months ago by njornet ▴ 20
0
votes
2
replies
762
views
Restrictive alignment with minimap2
nanopore alignment minimap2
12 months ago by njornet ▴ 20
0
votes
4
replies
909
views
Use alignment as reference genome to separate DNA from a mixed sample
human sequencing nanopore alignment
updated 13 months ago by 153k • written 13 months ago by ▴ 20
0
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1
reply
909
views
Comment: Comment: Use alignment as reference genome to separate DNA from a mixed sample
13 months ago by njornet ▴ 20
0
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0
replies
3.0k
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Comment: Comment: Duplicated reads (IDs) from nanopore sequencing
15 months ago by njornet ▴ 20
0
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2
replies
3.0k
views
Comment: Comment: Duplicated reads (IDs) from nanopore sequencing
15 months ago by njornet ▴ 20
0
votes
9
replies
3.0k
views
Duplicated reads (IDs) from nanopore sequencing
bam nanopore sequencing
15 months ago by njornet ▴ 20
0
votes
0
replies
645
views
Comment: Comment: Phasing a mixture of two individuals' DNA with long reads
16 months ago by njornet ▴ 20
0
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2
replies
645
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Phasing a mixture of two individuals' DNA with long reads
long-reads phasing
16 months ago by njornet ▴ 20
0
votes
1
reply
692
views
Comment: Comment: Software to separate reads from different individuals
16 months ago by njornet ▴ 20
0
votes
3
replies
692
views
Software to separate reads from different individuals
software development nanopore
updated 16 months ago by 153k • written 16 months ago by ▴ 20
0
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0
replies
1.2k
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Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
16 months ago by njornet ▴ 20
0
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0
replies
1.2k
views
Comment: Comment: Should I remove unlocalized scaffols in reference genome before alignment?
16 months ago by njornet ▴ 20
0
votes
5
replies
1.2k
views
Should I remove unlocalized scaffols in reference genome before alignment?
qualimap alignment minimap2 GRCh38 assembly
16 months ago by njornet ▴ 20
4
votes
2
replies
1.2k
views
Assume "yes" as the answer to any prompts with bioconda
docker container bioconda
updated 16 months ago by 9.3k • written 16 months ago by ▴ 20
2
votes
2
replies
927
views
Problem with Sniffles pipeline and SV calling help
SV sniffles StructuralVariant
updated 16 months ago by 153k • written 16 months ago by ▴ 20
0
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1
reply
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
0
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1
reply
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
0
votes
0
replies
784
views
Comment: Comment: fmols for nanopore library loading
17 months ago by njornet ▴ 20
0
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0
replies
1.0k
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Comment: Comment: Adaptive sampling for whole chromosomes
17 months ago by njornet ▴ 20
0
votes
1
reply
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
0
votes
2
replies
784
views
fmols for nanopore library loading
nanopore sequencing libraryprep fmol LSK114
updated 17 months ago by 153k • written 17 months ago by ▴ 20
0
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1
reply
1.0k
views
Comment: Comment: Adaptive sampling for whole chromosomes
17 months ago by njornet ▴ 20
0
votes
4
replies
1.0k
views
Adaptive sampling for whole chromosomes
T2T Nanopore AdaptiveSampling aneuploidy centromeres
17 months ago by njornet ▴ 20
1
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1
reply
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
0
votes
0
replies
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
5
votes
14
replies
4.8k
views
Not getting any modification calls in nanopore reads with dorado basecaller
mofications dorado basecalling nanopore methylation
updated 17 months ago by 153k • written 17 months ago by ▴ 20
0
votes
1
reply
4.8k
views
Comment: Comment: Not getting any modification calls in nanopore reads with dorado basecaller
17 months ago by njornet ▴ 20
0
votes
0
replies
848
views
Comment: Comment: Weird Basecalled reads PHRED quality plot from pycoQC
17 months ago by njornet ▴ 20
0
votes
2
replies
848
views
Weird Basecalled reads PHRED quality plot from pycoQC
pycoQC nanopore sequencing
17 months ago by njornet ▴ 20
0
votes
0
replies
452
views
SAMstat mapping quality report MAPQ gt vs MAPQ lt
Sequencing mapping samstat
18 months ago by njornet ▴ 20
0
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0
replies
1.6k
views
Comment: Comment: Target deletions with adaptive sampling
18 months ago by njornet ▴ 20
1
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2
replies
1.6k
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Comment: Comment: Target deletions with adaptive sampling
18 months ago by njornet ▴ 20
3
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6
replies
1.6k
views
Target deletions with adaptive sampling
microdeletions nanopore AdaptiveSampling
18 months ago by njornet ▴ 20
0
votes
0
replies
867
views
Comment: Comment: Considerations for nanopore adaptive sampling enrichment designing
18 months ago by njornet ▴ 20
1
vote
2
replies
867
views
Considerations for nanopore adaptive sampling enrichment designing
adaptive-sampling nanopore
18 months ago by njornet ▴ 20
1
vote
2
replies
3.5k
views
Align dorado output to reference
minimap2 bam nanopore dorado
updated 18 months ago by 7.8k • written 18 months ago by ▴ 20
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