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760
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Comment: Comment: Haplotype specific alleles
11 months ago by Korsocius ▴ 250
1
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3
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760
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Haplotype specific alleles
freuqency bam haplotype
11 months ago by Korsocius ▴ 250
5
votes
2
replies
546
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find function with samtools - convert format to all subfolders
cram bam samtools
updated 10 months ago by 43k • written 24 months ago by ▴ 250
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0
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13k
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Comment: Comment: List all available databases for ANNOVAR
3.5 years ago by Korsocius ▴ 250
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1
reply
61k
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Comment: C: How To Sort Bed Format File
updated 4.4 years ago by 43k • written 6.9 years ago by ▴ 250
15
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1
reply
61k
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Answer: A: How To Sort Bed Format File
updated 4.7 years ago by 11k • written 9.2 years ago by ▴ 250
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0
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1.8k
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Comment: A: Error in SAM to BAM conversion
4.9 years ago by Korsocius ▴ 250
3
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4
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3.0k
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Parallel for bwa mem - problem with -R argument for ID and SM
parallel alignment bwa
updated 5.1 years ago by 82k • written 6.1 years ago by ▴ 250
0
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1
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3.5k
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Comment: C: How to combine multiple tools to detct SVs in WES data
6.1 years ago by Korsocius ▴ 250
0
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0
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3.0k
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Comment: C: Parallel for bwa mem - problem with -R argument for ID and SM
6.1 years ago by Korsocius ▴ 250
0
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0
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6.9k
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Comment: C: Using parallel with Mem
6.1 years ago by Korsocius ▴ 250
0
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1
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6.9k
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Answer: A: Using parallel with Mem
6.1 years ago by Korsocius ▴ 250
0
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0
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3.0k
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Comment: C: Is it possible to run variant calling software in parallel, are there any Shell
6.2 years ago by Korsocius ▴ 250
0
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0
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6.9k
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Comment: C: Awk command for fastq read length and number of reads?
6.2 years ago by Korsocius ▴ 250
0
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0
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7.6k
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Answer: A: Software To Call Somatic Indels?
6.2 years ago by Korsocius ▴ 250
0
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0
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3.0k
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Comment: C: Is it possible to run variant calling software in parallel, are there any Shell
6.2 years ago by Korsocius ▴ 250
0
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1
reply
3.0k
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Comment: C: Is it possible to run variant calling software in parallel, are there any Shell
6.2 years ago by Korsocius ▴ 250
1
vote
5
replies
1.4k
views
Merge series and recognize end of it - AWK
AWK Merge
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 250
0
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1
reply
1.4k
views
Comment: C: Merge series and recognize end of it - AWK
6.3 years ago by Korsocius ▴ 250
4
votes
1
reply
15k
views
Answer: A: How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
6.4 years ago by Korsocius ▴ 250
2
votes
2
replies
1.5k
views
Paralellize samtools piped with awk
parallel samtools
6.4 years ago by Korsocius ▴ 250
0
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0
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5.2k
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Comment: C: How to get coordinates from HGVSc, HGVSp and gene name
6.6 years ago by Korsocius ▴ 250
3
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4
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5.2k
views
How to get coordinates from HGVSc, HGVSp and gene name
next-gen hgvs
updated 6.6 years ago by 23k • written 6.6 years ago by ▴ 250
0
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0
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1.7k
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Comment: C: Change signification in bam for duplicates
7.3 years ago by Korsocius ▴ 250
2
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2
replies
1.7k
views
Change signification in bam for duplicates
sam bam duplicates
updated 7.3 years ago by 104k • written 7.3 years ago by ▴ 250
0
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0
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2.5k
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Comment: C: Counting summary info (count of reads and average GC) for segment with specific
7.4 years ago by Korsocius ▴ 250
0
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1
reply
2.5k
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Comment: C: Counting summary info (count of reads and average GC) for segment with specific
7.4 years ago by Korsocius ▴ 250
0
votes
1
reply
2.5k
views
Comment: C: Counting summary info (count of reads and average GC) for segment with specific
7.4 years ago by Korsocius ▴ 250
0
votes
6
replies
2.5k
views
Counting summary info (count of reads and average GC) for segment with specific length
next-gen genome
updated 7.4 years ago by 7.1k • written 7.4 years ago by ▴ 250
1
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0
replies
57k
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Comment: C: How Can I Know The Length Of Mapped Reads From Bam File?
7.7 years ago by Korsocius ▴ 250
0
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0
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7.3k
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Answer: A: Homozygous Ref Calls And No Calls
7.7 years ago by Korsocius ▴ 250
0
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0
replies
1.6k
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Fusion gene partner
DNA
7.9 years ago by Korsocius ▴ 250
0
votes
4
replies
2.7k
views
ASCII conversion from bam file
ASCII Quality
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 250
0
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1
reply
17k
views
Comment: C: How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vc
8.6 years ago by Korsocius ▴ 250
5
votes
5
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3.5k
views
Count of GC in row, but not from N bases
GC
updated 15 months ago by 43k • written 8.9 years ago by ▴ 250
0
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1
reply
3.5k
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Comment: C: Count of GC in row, but not from N bases
8.9 years ago by Korsocius ▴ 250
0
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0
replies
3.5k
views
Comment: Comment: Count of GC in row, but not from N bases
updated 15 months ago by 43k • written 8.9 years ago by ▴ 250
1
vote
0
replies
4.5k
views
Comment: C: BEDTools genomecov command and input file isse
9.0 years ago by Korsocius ▴ 250
0
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0
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2.1k
views
Comment: Comment: bedtools probelm of syntax
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 250
0
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1
reply
2.1k
views
Comment: Comment: bedtools probelm of syntax
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 250
4
votes
4
replies
2.1k
views
bedtools probelm of syntax
map bedtools DNA
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 250
1
vote
1
reply
2.1k
views
Comment: Comment: R plot with different point in graph
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 250
4
votes
3
replies
2.1k
views
R plot with different point in graph
plot R
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 250
0
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0
replies
12k
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Comment: C: Calculating GC content from BAM file by BED file
9.3 years ago by Korsocius ▴ 250
0
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1
reply
12k
views
Comment: C: Calculating GC content from BAM file by BED file
9.4 years ago by Korsocius ▴ 250
0
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0
replies
2.7k
views
Comment: C: ASCII conversion from bam file
9.4 years ago by Korsocius ▴ 250
0
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1
reply
2.7k
views
Comment: Comment: ASCII conversion from bam file
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 250
20
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16
replies
4.7k
views
6 follow
Parallel for shell script with different output
shell parallel
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 250
0
votes
1
reply
4.7k
views
Comment: C: Parallel for shell script with different output
9.5 years ago by Korsocius ▴ 250
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