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36k
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"Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror" Error when installing package
R
shiny-server
7.0 years ago by
AB
▴ 360
0
votes
0
replies
36k
views
Answer:
A: "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror
7.0 years ago by
AB
▴ 360
0
votes
0
replies
2.5k
views
Answer:
A: extract SNP, variants
7.1 years ago by
AB
▴ 360
2
votes
5
replies
5.0k
views
Picard MergeSam error : Cannot use index file with textual SAM file
picard
mergesam
7.1 years ago by
AB
▴ 360
0
votes
1
reply
5.0k
views
Comment:
A: Picard MergeSam error : Cannot use index file with textual SAM file
7.1 years ago by
AB
▴ 360
0
votes
1
reply
5.0k
views
Comment:
C: Picard MergeSam error : Cannot use index file with textual SAM file
7.1 years ago by
AB
▴ 360
0
votes
0
replies
1.9k
views
Comment:
C: bam-readcount : Reference_base is not the base with highest count
7.1 years ago by
AB
▴ 360
4
votes
3
replies
1.9k
views
bam-readcount : Reference_base is not the base with highest count
bam-readcount
updated 7.1 years ago by
iraun
6.2k • written 7.1 years ago by
AB
▴ 360
0
votes
0
replies
1.8k
views
Very high negative scores from bigWigAverageOverBed
ChIP-Seq
bigWigAverageOverBed
updated 7.5 years ago by
Biostar
20 • written 7.6 years ago by
AB
▴ 360
0
votes
0
replies
3.0k
views
Comment:
C: Finding distribution of indels from vcf file
7.6 years ago by
AB
▴ 360
4
votes
2
replies
3.0k
views
Finding distribution of indels from vcf file
vcf
samtools
barplots
updated 7.6 years ago by
Brice Sarver
★ 3.8k • written 7.6 years ago by
AB
▴ 360
0
votes
0
replies
1.8k
views
What is a good cutoff of mappability score from bigWigAverageOverBed ?
ChIP-Seq
bigWigAverageOverBed
7.6 years ago by
AB
▴ 360
0
votes
1
reply
3.1k
views
Comment:
C: what do negative values from bigWigAverageOverBed output mean?
7.6 years ago by
AB
▴ 360
2
votes
3
replies
3.1k
views
what do negative values from bigWigAverageOverBed output mean?
ChIP-Seq
bigWigAverageOverBed
deepTools
updated 7.6 years ago by
Devon Ryan
104k • written 7.6 years ago by
AB
▴ 360
1
vote
1
reply
2.4k
views
Calculating FPKM of reads that overlap regions of interest
ChIP-Seq
fpkm
bedtools
7.7 years ago by
AB
▴ 360
9
votes
2
replies
4.8k
views
MACS2 Peak Calling : Different number of peaks for each replicate
ChIP-Seq
biological-replicates
MACS2
updated 21 months ago by
Ram
43k • written 8.3 years ago by
AB
▴ 360
0
votes
1
reply
1.7k
views
Finding out if non-coding transcripts from CPAT are tissue specific?
RNA-Seq
CPAT
lncRNA
updated 21 months ago by
Ram
43k • written 8.2 years ago by
AB
▴ 360
3
votes
6
replies
3.3k
views
Differential binding analysis of motif-containing peaks
ChIP-Seq
FIMO
DiffBind
updated 21 months ago by
Ram
43k • written 8.2 years ago by
AB
▴ 360
0
votes
0
replies
3.3k
views
Comment:
A: Differential binding analysis of motif-containing peaks
8.2 years ago by
AB
▴ 360
0
votes
0
replies
3.3k
views
Comment:
C: Differential binding analysis of motif-containing peaks
8.2 years ago by
AB
▴ 360
1
vote
3
replies
1.8k
views
Determine Condition using LogFC values
RNA-Seq
fold-changes
updated 21 months ago by
Ram
43k • written 8.4 years ago by
AB
▴ 360
0
votes
1
reply
3.1k
views
Removing batch effects from RPKM data
limma
removeBatchEffect
batch-effect
rpkm
updated 12 days ago by
Ram
43k • written 8.5 years ago by
AB
▴ 360
0
votes
1
reply
9.8k
views
Comment:
C: PCA plot of RPKM data from RNA-Seq dataset
8.5 years ago by
AB
▴ 360
13
votes
6
replies
9.8k
views
PCA plot of RPKM data from RNA-Seq dataset
RNA-Seq
bioconductor
pca
rpkm
updated 8.5 years ago by
informatics bot
▴ 760 • written 8.5 years ago by
AB
▴ 360
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