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0
votes
0
replies
396
views
Integrating and annotating multiple samples of single cell ATAC data
signac seurat scATAC
5 weeks ago by AB ▴ 390
2
votes
1
reply
571
views
Regressing variables for finding Differentially expressed genes
batcheffect seurat bias scRNASeq
updated 4 months ago by 6.5k • written 4 months ago by ▴ 390
0
votes
1
reply
891
views
Comment: Comment: P-value calculation between groups in split violin plot
6 months ago by AB ▴ 390
0
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3
replies
891
views
P-value calculation between groups in split violin plot
violinplot ggplot singlecellRnaseq
updated 6 months ago by 5.1k • written 6 months ago by ▴ 390
2
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0
replies
1.8k
views
Answer: Answer: Tools for fasterq file?
7 months ago by AB ▴ 390
1
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0
replies
2.3k
views
Answer: Answer: How to convert fasterq File into fastq files ?
7 months ago by AB ▴ 390
0
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0
replies
773
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Comment: Comment: single-cell transcriptomics and bulk proteomics data integration
7 months ago by AB ▴ 390
0
votes
1
reply
1000
views
Sample-wise raw count matrix from 10x multiplexed data
cellranger soupx singlecellRNASeq 10X
updated 11 weeks ago by • 0 • written 8 months ago by ▴ 390
0
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0
replies
980
views
Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
10 months ago by AB ▴ 390
0
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0
replies
980
views
Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
10 months ago by AB ▴ 390
0
votes
1
reply
980
views
Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
10 months ago by AB ▴ 390
0
votes
6
replies
980
views
sample-specific celltype in integrated data . Biology or batch effect ?
single-cell seurat scRNAseq batch-effect
10 months ago by AB ▴ 390
0
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1
reply
1.3k
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
10 months ago by AB ▴ 390
0
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2
replies
1.3k
views
Comment: Comment: Differential expression analysis between groups with varying cell proportions
10 months ago by AB ▴ 390
1
vote
9
replies
1.3k
views
Differential expression analysis between groups with varying cell proportions
scRNA-Seq Seurat Pseudobulk
updated 10 months ago by 6.5k • written 10 months ago by ▴ 390
0
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0
replies
638
views
Which are the best Cell - Cell communication packages for single cell RNASeq timeseries data?
R scrna seurat
3.0 years ago by AB ▴ 390
1
vote
0
replies
999
views
Answer: Answer: Identifying DEG's on Integrated samples
3.0 years ago by AB ▴ 390
7
votes
3
replies
3.4k
views
Extending and clipping bed files
ChIP-Seq bedtools
updated 3.5 years ago by • 0 • written 9.0 years ago by ▴ 390
0
votes
4
replies
3.5k
views
Database of mouse ligand receptors
ligand-receptor database mm9
updated 4.0 years ago by • 0 • written 8.0 years ago by ▴ 390
2
votes
1
reply
3.3k
views
results from SNPSift Concordance
SNPSift concordance snp
updated 4.1 years ago by • 0 • written 8.4 years ago by ▴ 390
1
vote
0
replies
3.3k
views
Answer: A: Error :[[<- defined for objects of type "S4" only for subclasses of environment
4.7 years ago by AB ▴ 390
1
vote
3
replies
3.3k
views
Error :[[<- defined for objects of type "S4" only for subclasses of environment - Shiny App error
shiny Seurat single cell RNASeq
4.7 years ago by AB ▴ 390
0
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0
replies
3.9k
views
Answer: A: Shiny board with seurat object
4.7 years ago by AB ▴ 390
0
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0
replies
3.3k
views
Comment: C: Error :[[<- defined for objects of type "S4" only for subclasses of environment
4.7 years ago by AB ▴ 390
3
votes
2
replies
6.0k
views
Error when using Bedtools fisher on sorted bed files
ChIP-Seq bedtools fisher test
updated 4.8 years ago by ▴ 160 • written 9.6 years ago by ▴ 390
1
vote
0
replies
1.7k
views
Comment: C: Aligning multiple runs using STARSolo
4.8 years ago by AB ▴ 390
3
votes
2
replies
1.7k
views
Aligning multiple runs using STARSolo
single cell RNASeq scRNA STARSolo STAR Alignment
updated 4.8 years ago by 89k • written 4.8 years ago by ▴ 390
0
votes
3
replies
2.3k
views
sratoolkit prefetch command returns no result
sratoolkit
updated 4.8 years ago by 89k • written 4.8 years ago by ▴ 390
0
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0
replies
2.3k
views
Answer: A: sratoolkit prefetch command returns no result
4.8 years ago by AB ▴ 390
0
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0
replies
2.3k
views
Comment: C: sratoolkit prefetch command returns no result
4.8 years ago by AB ▴ 390
2
votes
1
reply
5.0k
views
Downloading single cell RNASeq data using SRA
single-cell-RNASeq sratoolkit
updated 2.2 years ago by 45k • written 5.0 years ago by ▴ 390
0
votes
1
reply
1.3k
views
Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data
single cell RNA-Seq Seurat
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 390
0
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1
reply
4.4k
views
Comment: C: Differential binding analysis of motif-containing peaks
updated 5.7 years ago by 45k • written 9.6 years ago by ▴ 390
0
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0
replies
4.9k
views
Comment: C: Correcting batch effects between RPKM datasets?
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 390
0
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0
replies
22k
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Answer: A: Label Clusters in Seurat
6.1 years ago by AB ▴ 390
2
votes
0
replies
4.3k
views
Answer: A: Remove duplicate genes with lower significance in microarray data analysis
6.1 years ago by AB ▴ 390
1
vote
1
reply
4.4k
views
Answer: A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
6.3 years ago by AB ▴ 390
2
votes
1
reply
2.1k
views
Answer: A: how to make input data R packge limma
6.3 years ago by AB ▴ 390
1
vote
0
replies
9.6k
views
Answer: A: Saving 3D plot from rgl as a pdf
6.4 years ago by AB ▴ 390
3
votes
3
replies
9.6k
views
Saving 3D plot from rgl as a pdf
rgl 3dplot
6.4 years ago by AB ▴ 390
3
votes
8
replies
13k
views
converting vcf to text file
vcf eqtl Matrix EQTL
updated 6.6 years ago by 20 • written 7.9 years ago by ▴ 390
0
votes
1
reply
1.7k
views
Count empty rows in Rhandsontable
rhandsontable shiny
6.9 years ago by AB ▴ 390
3
votes
6
replies
5.4k
views
Error while running pfamscan.pl : Unable to translate nucleotide sequences to protein sequences
RNA-Seq PfamScan lincRNA
updated 7.0 years ago by 45k • written 9.6 years ago by ▴ 390
0
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1
reply
5.4k
views
Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 7.0 years ago by 45k • written 9.6 years ago by ▴ 390
0
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1
reply
5.4k
views
Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 7.0 years ago by 45k • written 9.6 years ago by ▴ 390
0
votes
1
reply
1.6k
views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc genomebrowser boxplot GTEx Barcharts
7.0 years ago by AB ▴ 390
0
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0
replies
1.6k
views
Answer: C: Error displaying GTEX like boxplot in UCSC Genome Browser
7.0 years ago by AB ▴ 390
0
votes
0
replies
4.2k
views
Answer: A: how to do TSNEPlot which differentiate the sample and cluster at the same time i
7.0 years ago by AB ▴ 390
6
votes
0
replies
5.4k
views
Answer: A: Converting narrowpeak files to make it compatible with UCSC trackhub
updated 7.1 years ago by 153k • written 7.1 years ago by ▴ 390
8
votes
1
reply
5.4k
views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc genomebrowser narrowpeakfile ucscutilites
7.1 years ago by AB ▴ 390
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