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0
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3
replies
2.0k
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Disappearing CB, the bam tag after samtools sort -t CB
sequencing Samtools RNA-Seq
updated 3 months ago by • 0 • written 3.5 years ago by ▴ 110
4
votes
7
replies
2.8k
views
Corrupted FASTq files with missing "+" under some sequences.
fastq RNAseq corruption recover
updated 7 months ago by • 0 • written 2.9 years ago by ▴ 110
0
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0
replies
1.2k
views
Answer: Answer: MiXCR error with the complied cat TCR library
14 months ago by akh22 ▴ 110
1
vote
2
replies
1.8k
views
MacStudio for Bioinformatics
Benchmark Impression Studio Mac
updated 2.1 years ago by 27k • written 2.1 years ago by ▴ 110
0
votes
2
replies
1.4k
views
Issue with Seurat SpatialPlot: spots not filling the whole tissue image
Seurat Tissue Transcriptomics 10xVisium
2.5 years ago by akh22 ▴ 110
0
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0
replies
1.4k
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Answer: Answer: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
2.5 years ago by akh22 ▴ 110
0
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0
replies
1.4k
views
Comment: Comment: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
2.7 years ago by akh22 ▴ 110
0
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0
replies
2.0k
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Comment: Comment: Disappearing CB, the bam tag after samtools sort -t CB
2.7 years ago by akh22 ▴ 110
0
votes
2
replies
2.8k
views
Comment: Comment: Corrupted FASTq files with missing "+" under some sequences.
2.9 years ago by akh22 ▴ 110
0
votes
1
reply
2.6k
views
Seurat obj conversion to Anndata not accurately creating var in a h5ad file
RNA-Seq R Seurat Anndata
2.9 years ago by akh22 ▴ 110
0
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0
replies
2.6k
views
Answer: Answer: Seurat obj conversion to Anndata not accurately creating var in a h5ad file
2.9 years ago by akh22 ▴ 110
0
votes
1
reply
1.5k
views
Comment: C: scRNA Cell Type ID web resources
3.3 years ago by akh22 ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
3.6 years ago by akh22 ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
3.6 years ago by akh22 ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
3.6 years ago by akh22 ▴ 110
0
votes
1
reply
2.0k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
updated 3.6 years ago by 141k • written 3.6 years ago by ▴ 110
0
votes
9
replies
2.0k
views
empty fastq files created by docker bcl2fastq2 v2.20 OSX
RNA-Seq Assembly sequence next-gen
updated 2.4 years ago by • 0 • written 3.6 years ago by ▴ 110
1
vote
0
replies
3.8k
views
Comment: C: Adjust for covariates
4.0 years ago by akh22 ▴ 110
0
votes
2
replies
2.9k
views
Amazon AWS setup for the bioinformatic analysis particularly scRNAseq
AWS Rstudio scRNAseq
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 110
0
votes
0
replies
1.7k
views
Comment: C: Getting a GTF of expressed repeat annotation from Ensembl
4.0 years ago by akh22 ▴ 110
1
vote
2
replies
1.7k
views
Getting a GTF of expressed repeat annotation from Ensembl
RNA-Seq sequence
4.1 years ago by akh22 ▴ 110
0
votes
1
reply
14k
views
Comment: C: How to adjust data for "continuous" covariates ?
4.1 years ago by akh22 ▴ 110
8
votes
1
reply
10k
views
Seurat3: RNA vs SCT assays for DotPlot
scRNAseq Seurat3
updated 4.7 years ago by ★ 16k • written 4.7 years ago by ▴ 110
0
votes
0
replies
2.1k
views
Answer: A: Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensem
4.7 years ago by akh22 ▴ 110
1
vote
4
replies
2.1k
views
Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensemble
RNA-Seq rna-seq Reference Genome
4.7 years ago by akh22 ▴ 110
0
votes
0
replies
889
views
Model Matrix Interacting model
RNA-Seq next-gen edgeR Model/Design Matrix
4.8 years ago by akh22 ▴ 110
0
votes
7
replies
4.7k
views
Loading 10x data into Monocle 3
RNA-Seq next-gen R Monocle3 10xdata
4.8 years ago by akh22 ▴ 110
0
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0
replies
4.7k
views
Answer: A: Loading 10x data into Monocle 3
4.8 years ago by akh22 ▴ 110
0
votes
0
replies
4.7k
views
Comment: C: Loading 10x data into Monocle 3
4.8 years ago by akh22 ▴ 110
0
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1
reply
4.7k
views
Comment: C: Loading 10x data into Monocle 3
4.8 years ago by akh22 ▴ 110
0
votes
1
reply
4.7k
views
Comment: C: Loading 10x data into Monocle 3
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 110
0
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0
replies
4.8k
views
Comment: C: Bioinformatics Workstation Suggestions
4.9 years ago by akh22 ▴ 110
11
votes
5
replies
4.8k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 11 months ago by 43k • written 4.9 years ago by ▴ 110
4
votes
5
replies
1.5k
views
scRNA Cell Type ID web resources
RNA-Seq next-gen scRNAseq
updated 4.9 years ago by ★ 16k • written 4.9 years ago by ▴ 110
2
votes
0
replies
3.5k
views
Answer: A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
4.9 years ago by akh22 ▴ 110
3
votes
6
replies
3.5k
views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
RNA-Seq R assembly gene
4.9 years ago by akh22 ▴ 110
0
votes
0
replies
3.5k
views
Comment: C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 110
0
votes
1
reply
3.5k
views
Comment: C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 4.9 years ago by 35k • written 4.9 years ago by ▴ 110
1
vote
0
replies
11k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
4.9 years ago by akh22 ▴ 110
0
votes
0
replies
11k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
4.9 years ago by akh22 ▴ 110
12
votes
10
replies
11k
views
converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with no luck
RNA-Seq R gene
updated 4.9 years ago by ▴ 260 • written 4.9 years ago by ▴ 110
0
votes
0
replies
11k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
4.9 years ago by akh22 ▴ 110
0
votes
0
replies
11k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
4.9 years ago by akh22 ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
4.9 years ago by akh22 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
4.9 years ago by akh22 ▴ 110
0
votes
1
reply
2.5k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
4.9 years ago by akh22 ▴ 110
0
votes
0
replies
2.5k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
4.9 years ago by akh22 ▴ 110
0
votes
7
replies
2.5k
views
Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
RNA-Seq R assembly
4.9 years ago by akh22 ▴ 110
2
votes
2
replies
1.2k
views
Amazon EC2 and S3 newbie setup question
RNA-Seq
4.9 years ago by akh22 ▴ 110
3
votes
5
replies
3.0k
views
Trimmomatic output file Issue
RNA-Seq sequencing
4.9 years ago by akh22 ▴ 110
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