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3
votes
2
replies
477
views
bamCoverage --MNase error : function a paired end library is required.
deeptools
updated 5 months ago by
GenoMax
148k • written 5 months ago by
akh22
▴ 120
1
vote
0
replies
477
views
Comment:
Comment: bamCoverage --MNase error : function a paired end library is required.
updated 5 months ago by
GenoMax
148k • written 5 months ago by
akh22
▴ 120
0
votes
3
replies
2.3k
views
Disappearing CB, the bam tag after samtools sort -t CB
sequencing
Samtools
RNA-Seq
updated 10 months ago by
liu2005678
• 0 • written 4.2 years ago by
akh22
▴ 120
4
votes
7
replies
3.6k
views
Corrupted FASTq files with missing "+" under some sequences.
fastq
RNAseq
corruption
recover
updated 15 months ago by
Tommaso
• 0 • written 3.6 years ago by
akh22
▴ 120
0
votes
0
replies
1.4k
views
Answer:
Answer: MiXCR error with the complied cat TCR library
22 months ago by
akh22
▴ 120
1
vote
2
replies
2.0k
views
MacStudio for Bioinformatics
Benchmark
Impression
Studio
Mac
updated 2.7 years ago by
Jean-Karim Heriche
27k • written 2.7 years ago by
akh22
▴ 120
0
votes
2
replies
1.7k
views
Issue with Seurat SpatialPlot: spots not filling the whole tissue image
Seurat
Tissue
Transcriptomics
10xVisium
3.1 years ago by
akh22
▴ 120
0
votes
0
replies
1.7k
views
Answer:
Answer: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
3.1 years ago by
akh22
▴ 120
0
votes
0
replies
1.7k
views
Comment:
Comment: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
3.3 years ago by
akh22
▴ 120
0
votes
0
replies
2.3k
views
Comment:
Comment: Disappearing CB, the bam tag after samtools sort -t CB
3.3 years ago by
akh22
▴ 120
0
votes
2
replies
3.6k
views
Comment:
Comment: Corrupted FASTq files with missing "+" under some sequences.
3.5 years ago by
akh22
▴ 120
0
votes
1
reply
2.9k
views
Seurat obj conversion to Anndata not accurately creating var in a h5ad file
RNA-Seq
R
Seurat
Anndata
3.6 years ago by
akh22
▴ 120
0
votes
0
replies
2.9k
views
Answer:
Answer: Seurat obj conversion to Anndata not accurately creating var in a h5ad file
3.6 years ago by
akh22
▴ 120
0
votes
1
reply
1.7k
views
Comment:
C: scRNA Cell Type ID web resources
3.9 years ago by
akh22
▴ 120
0
votes
1
reply
2.3k
views
Comment:
C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by
akh22
▴ 120
0
votes
1
reply
2.3k
views
Comment:
C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by
akh22
▴ 120
0
votes
1
reply
2.3k
views
Comment:
C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by
akh22
▴ 120
0
votes
1
reply
2.3k
views
Comment:
C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
updated 4.2 years ago by
GenoMax
148k • written 4.2 years ago by
akh22
▴ 120
1
vote
9
replies
2.3k
views
empty fastq files created by docker bcl2fastq2 v2.20 OSX
RNA-Seq
Assembly
sequence
next-gen
updated 3.0 years ago by
Charles
▴ 10 • written 4.2 years ago by
akh22
▴ 120
1
vote
0
replies
4.1k
views
Comment:
C: Adjust for covariates
4.6 years ago by
akh22
▴ 120
0
votes
2
replies
3.2k
views
Amazon AWS setup for the bioinformatic analysis particularly scRNAseq
AWS
Rstudio
scRNAseq
updated 4.6 years ago by
Kevin Blighe
88k • written 4.6 years ago by
akh22
▴ 120
0
votes
0
replies
1.9k
views
Comment:
C: Getting a GTF of expressed repeat annotation from Ensembl
4.6 years ago by
akh22
▴ 120
1
vote
2
replies
1.9k
views
Getting a GTF of expressed repeat annotation from Ensembl
RNA-Seq
sequence
4.7 years ago by
akh22
▴ 120
0
votes
1
reply
15k
views
Comment:
C: How to adjust data for "continuous" covariates ?
4.7 years ago by
akh22
▴ 120
8
votes
1
reply
11k
views
Seurat3: RNA vs SCT assays for DotPlot
scRNAseq
Seurat3
updated 5.3 years ago by
jared.andrews07
★ 18k • written 5.3 years ago by
akh22
▴ 120
0
votes
0
replies
2.3k
views
Answer:
A: Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensem
5.4 years ago by
akh22
▴ 120
1
vote
4
replies
2.3k
views
Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensemble
RNA-Seq
rna-seq
Reference Genome
5.4 years ago by
akh22
▴ 120
0
votes
0
replies
957
views
Model Matrix Interacting model
RNA-Seq
next-gen
edgeR
Model/Design Matrix
5.4 years ago by
akh22
▴ 120
0
votes
7
replies
5.0k
views
Loading 10x data into Monocle 3
RNA-Seq
next-gen
R
Monocle3
10xdata
5.4 years ago by
akh22
▴ 120
0
votes
0
replies
5.0k
views
Answer:
A: Loading 10x data into Monocle 3
5.4 years ago by
akh22
▴ 120
0
votes
0
replies
5.0k
views
Comment:
C: Loading 10x data into Monocle 3
5.4 years ago by
akh22
▴ 120
0
votes
1
reply
5.0k
views
Comment:
C: Loading 10x data into Monocle 3
5.4 years ago by
akh22
▴ 120
0
votes
1
reply
5.0k
views
Comment:
C: Loading 10x data into Monocle 3
updated 5.4 years ago by
Ram
44k • written 5.4 years ago by
akh22
▴ 120
0
votes
0
replies
5.2k
views
Comment:
C: Bioinformatics Workstation Suggestions
5.5 years ago by
akh22
▴ 120
11
votes
5
replies
5.2k
views
Forum:
Bioinformatics Workstation Suggestions
RNA-Seq
next-gen
workstation
updated 18 months ago by
Ram
44k • written 5.5 years ago by
akh22
▴ 120
4
votes
5
replies
1.7k
views
scRNA Cell Type ID web resources
RNA-Seq
next-gen
scRNAseq
updated 5.5 years ago by
jared.andrews07
★ 18k • written 5.5 years ago by
akh22
▴ 120
2
votes
0
replies
3.9k
views
Answer:
A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
5.5 years ago by
akh22
▴ 120
3
votes
6
replies
3.9k
views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
RNA-Seq
R
assembly
gene
5.5 years ago by
akh22
▴ 120
0
votes
0
replies
3.9k
views
Comment:
C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 5.5 years ago by
h.mon
35k • written 5.5 years ago by
akh22
▴ 120
0
votes
1
reply
3.9k
views
Comment:
C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 5.5 years ago by
h.mon
35k • written 5.5 years ago by
akh22
▴ 120
1
vote
0
replies
13k
views
Comment:
C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by
akh22
▴ 120
0
votes
0
replies
13k
views
Comment:
C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by
akh22
▴ 120
12
votes
10
replies
13k
views
converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with no luck
RNA-Seq
R
gene
updated 5.5 years ago by
prabin.dm
▴ 260 • written 5.5 years ago by
akh22
▴ 120
0
votes
0
replies
13k
views
Comment:
C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by
akh22
▴ 120
0
votes
0
replies
13k
views
Comment:
C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by
akh22
▴ 120
0
votes
0
replies
2.8k
views
Comment:
C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by
akh22
▴ 120
0
votes
1
reply
2.8k
views
Comment:
C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by
akh22
▴ 120
0
votes
1
reply
2.8k
views
Comment:
C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by
akh22
▴ 120
0
votes
0
replies
2.8k
views
Comment:
C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by
akh22
▴ 120
0
votes
7
replies
2.8k
views
Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
RNA-Seq
R
assembly
5.5 years ago by
akh22
▴ 120
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