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13
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11
replies
28k
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6 follow
How to determine reference genome that was used for alignment given BAM with obscure or no header
BAM Reference alignment Reference Genome
updated 2.5 years ago by 45k • written 10.1 years ago by ▴ 280
0
votes
1
reply
1.7k
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Comment: A: Is the ancient ethiopian genome recently sequenced available to download
updated 5.7 years ago by 45k • written 9.7 years ago by ▴ 280
12
votes
8
replies
4.9k
views
6 follow
What are most recommended / state-of-the-art whole genome FASTQ datasets for benchmarking purposes?
FASTQ Variant-calling conversions Alignment BAM
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 280
1
vote
0
replies
6.1k
views
Answer: A: Can someone help me with imputation of missing SNPs using beagle 4?
8.8 years ago by Irene@Sequencing.com ▴ 280
0
votes
0
replies
2.5k
views
Job: Director of Bioinformatics IT at Sequencing.com
bioinformatics-director
updated 2.3 years ago by 45k • written 8.8 years ago by ▴ 280
0
votes
2
replies
2.8k
views
What are the best resources or tools to sort an unsorted human gVCF
gVCF genome VCF unsorted vcf
updated 8.8 years ago by ▴ 200 • written 8.8 years ago by ▴ 280
1
vote
2
replies
3.2k
views
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
liftover coordinates reference genomes
updated 9.1 years ago by ★ 5.2k • written 9.1 years ago by ▴ 280
0
votes
1
reply
3.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
9.4 years ago by Irene@Sequencing.com ▴ 280
0
votes
1
reply
3.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
9.4 years ago by Irene@Sequencing.com ▴ 280
0
votes
1
reply
3.4k
views
Comment: A: Any way to differentiate from a BAM which minor build human reference genome was
9.4 years ago by Irene@Sequencing.com ▴ 280
5
votes
10
replies
3.4k
views
Any way to differentiate from a BAM which minor build human reference genome was used for alignment?
reference genome BAM
9.4 years ago by Irene@Sequencing.com ▴ 280
0
votes
1
reply
3.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
9.4 years ago by Irene@Sequencing.com ▴ 280
3
votes
1
reply
1.8k
views
Are there any available genome data files in .AVRO format
AVRO
updated 3.0 years ago by 45k • written 9.5 years ago by ▴ 280
0
votes
0
replies
2.5k
views
Job: Business Development @ Sequencing.com (Virtual/Telecommute/California)
Consumer-Genomics Sequencing NGS
updated 3.0 years ago by 45k • written 9.5 years ago by ▴ 280
2
votes
3
replies
1.7k
views
Is the ancient ethiopian genome recently sequenced available to download
Genome ancient-genome Mota Ethiopian
updated 2.9 years ago by 45k • written 9.7 years ago by ▴ 280
4
votes
0
replies
10k
views
Answer: Answer: GRCH38 and hg19
updated 2.6 years ago by 45k • written 10.1 years ago by ▴ 280
0
votes
1
reply
7.9k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
10.1 years ago by Irene@Sequencing.com ▴ 280
0
votes
0
replies
7.9k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
10.1 years ago by Irene@Sequencing.com ▴ 280
20
votes
14
replies
7.9k
views
How to handle chr Y data in BAM files from exome sequencing of human females
ChromosomeY BAM ChrY
updated 2.5 years ago by 45k • written 10.1 years ago by ▴ 280
0
votes
1
reply
7.9k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
10.1 years ago by Irene@Sequencing.com ▴ 280
0
votes
2
replies
28k
views
Comment: C: How to determine reference genome that was used for alignment given BAM with obs
10.1 years ago by Irene@Sequencing.com ▴ 280
0
votes
2
replies
28k
views
Comment: C: How to determine reference genome that was used for alignment given BAM with obs
updated 10.1 years ago by 166k • written 10.1 years ago by ▴ 280
1
vote
2
replies
5.3k
views
Issue indexing reference genome FASTA files - index file does not contain chromosome numbers?
FASTA Reference
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 280
0
votes
0
replies
22k
views
Comment: C: Where Can I Download Vcf Files For Publicly Available Data?
10.2 years ago by Irene@Sequencing.com ▴ 280
0
votes
0
replies
4.9k
views
Comment: C: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
10.3 years ago by Irene@Sequencing.com ▴ 280
0
votes
0
replies
4.9k
views
Comment: C: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
10.3 years ago by Irene@Sequencing.com ▴ 280
3
votes
1
reply
3.4k
views
How to add 'placeholder' quality scores to FASTA files (for converting FASTA with no scores to SAM, BAM and VCF )
FASTA Quality-Metrics
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 280
0
votes
0
replies
3.8k
views
Comment: C: Downloading bulk amount of data from ftp site
10.3 years ago by Irene@Sequencing.com ▴ 280
47
votes
12
replies
41k
views
6 follow
Forum: BWA vs Bowtie 2 (Poll)
BWA Poll Bowtie2
updated 3.2 years ago by 45k • written 10.3 years ago by ▴ 280
1
vote
0
replies
41k
views
Comment: C: BWA vs Bowtie 2 (Poll)
10.3 years ago by Irene@Sequencing.com ▴ 280
2
votes
1
reply
41k
views
Comment: C: BWA vs Bowtie 2 (Poll)
10.3 years ago by Irene@Sequencing.com ▴ 280
0
votes
1
reply
41k
views
Comment: A: BWA vs Bowtie 2 (Poll)
10.3 years ago by Irene@Sequencing.com ▴ 280
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