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12
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11
replies
23k
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6 follow
How to determine reference genome that was used for alignment given BAM with obscure or no header
BAM Reference alignment Reference Genome
updated 11 months ago by 41k • written 8.5 years ago by ▴ 270
0
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1
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1.3k
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Comment: A: Is the ancient ethiopian genome recently sequenced available to download
updated 4.1 years ago by 41k • written 8.1 years ago by ▴ 270
12
votes
8
replies
3.9k
views
6 follow
What are most recommended / state-of-the-art whole genome FASTQ datasets for benchmarking purposes?
FASTQ Variant-calling conversions Alignment BAM
updated 17 months ago by 41k • written 8.7 years ago by ▴ 270
1
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0
replies
4.9k
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Answer: A: Can someone help me with imputation of missing SNPs using beagle 4?
7.2 years ago by Irene@Sequencing.com ▴ 270
0
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0
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2.3k
views
Job: Director of Bioinformatics IT at Sequencing.com
bioinformatics-director
updated 8 months ago by 41k • written 7.2 years ago by ▴ 270
0
votes
2
replies
2.2k
views
What are the best resources or tools to sort an unsorted human gVCF
gVCF genome VCF unsorted vcf
updated 7.2 years ago by ▴ 200 • written 7.2 years ago by ▴ 270
1
vote
2
replies
2.7k
views
Do coordinates change between minor ref genome builds and can Liftover be used to convert minor ref genome coordinates?
liftover coordinates reference genomes
updated 7.5 years ago by ★ 5.2k • written 7.5 years ago by ▴ 270
0
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1
reply
2.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
7.8 years ago by Irene@Sequencing.com ▴ 270
0
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1
reply
2.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
7.8 years ago by Irene@Sequencing.com ▴ 270
0
votes
1
reply
2.4k
views
Comment: A: Any way to differentiate from a BAM which minor build human reference genome was
7.8 years ago by Irene@Sequencing.com ▴ 270
5
votes
10
replies
2.4k
views
Any way to differentiate from a BAM which minor build human reference genome was used for alignment?
reference genome BAM
7.8 years ago by Irene@Sequencing.com ▴ 270
0
votes
1
reply
2.4k
views
Comment: C: Any way to differentiate from a BAM which minor build human reference genome was
7.8 years ago by Irene@Sequencing.com ▴ 270
3
votes
1
reply
1.5k
views
Are there any available genome data files in .AVRO format
AVRO
updated 16 months ago by 41k • written 7.9 years ago by ▴ 270
0
votes
0
replies
2.3k
views
Job: Business Development @ Sequencing.com (Virtual/Telecommute/California)
Consumer-Genomics Sequencing NGS
updated 16 months ago by 41k • written 7.9 years ago by ▴ 270
2
votes
3
replies
1.3k
views
Is the ancient ethiopian genome recently sequenced available to download
Genome ancient-genome Mota Ethiopian
updated 15 months ago by 41k • written 8.1 years ago by ▴ 270
4
votes
0
replies
9.1k
views
Answer: Answer: GRCH38 and hg19
updated 11 months ago by 41k • written 8.5 years ago by ▴ 270
0
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1
reply
6.2k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
8.5 years ago by Irene@Sequencing.com ▴ 270
0
votes
0
replies
6.2k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
8.5 years ago by Irene@Sequencing.com ▴ 270
19
votes
14
replies
6.2k
views
How to handle chr Y data in BAM files from exome sequencing of human females
ChromosomeY BAM ChrY
updated 11 months ago by 41k • written 8.5 years ago by ▴ 270
0
votes
1
reply
6.2k
views
Comment: C: How to handle chr Y data in BAM files from exome sequencing of human females
8.5 years ago by Irene@Sequencing.com ▴ 270
0
votes
2
replies
23k
views
Comment: C: How to determine reference genome that was used for alignment given BAM with obs
8.5 years ago by Irene@Sequencing.com ▴ 270
0
votes
2
replies
23k
views
Comment: C: How to determine reference genome that was used for alignment given BAM with obs
updated 8.5 years ago by 158k • written 8.5 years ago by ▴ 270
1
vote
2
replies
4.6k
views
Issue indexing reference genome FASTA files - index file does not contain chromosome numbers?
FASTA Reference
updated 17 months ago by 41k • written 8.6 years ago by ▴ 270
0
votes
0
replies
18k
views
Comment: C: Where Can I Download Vcf Files For Publicly Available Data?
8.6 years ago by Irene@Sequencing.com ▴ 270
0
votes
0
replies
3.9k
views
Comment: C: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
8.7 years ago by Irene@Sequencing.com ▴ 270
0
votes
0
replies
3.9k
views
Comment: C: What are most recommended / state-of-the-art whole genome FASTQ datasets for ben
8.7 years ago by Irene@Sequencing.com ▴ 270
3
votes
1
reply
3.0k
views
How to add 'placeholder' quality scores to FASTA files (for converting FASTA with no scores to SAM, BAM and VCF )
FASTA Quality-Metrics
updated 17 months ago by 41k • written 8.7 years ago by ▴ 270
0
votes
0
replies
3.4k
views
Comment: C: Downloading bulk amount of data from ftp site
8.7 years ago by Irene@Sequencing.com ▴ 270
46
votes
12
replies
34k
views
6 follow
Forum: BWA vs Bowtie 2 (Poll)
BWA Poll Bowtie2
updated 18 months ago by 41k • written 8.7 years ago by ▴ 270
1
vote
0
replies
34k
views
Comment: C: BWA vs Bowtie 2 (Poll)
8.7 years ago by Irene@Sequencing.com ▴ 270
2
votes
1
reply
34k
views
Comment: C: BWA vs Bowtie 2 (Poll)
8.7 years ago by Irene@Sequencing.com ▴ 270
0
votes
1
reply
34k
views
Comment: A: BWA vs Bowtie 2 (Poll)
8.7 years ago by Irene@Sequencing.com ▴ 270
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