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598
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creating specific bed file from VCF
vcf vcf2bed
4.4 years ago by dec986 ▴ 370
0
votes
1
reply
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
0
replies
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
1
reply
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
1
reply
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
1
reply
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
0
replies
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
0
replies
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
0
votes
2
replies
2.9k
views
Comment: C: vcftools not ouputting log file when run from perl
4.4 years ago by dec986 ▴ 370
1
vote
0
replies
2.1k
views
Comment: C: Cannot identify software used to make image
5.2 years ago by dec986 ▴ 370
1
vote
1
reply
2.1k
views
Comment: C: Cannot identify software used to make image
5.2 years ago by dec986 ▴ 370
11
votes
6
replies
2.1k
views
Cannot identify software used to make image
DMR
updated 5.2 years ago by ★ 3.4k • written 5.2 years ago by ▴ 370
0
votes
0
replies
1.7k
views
Comment: C: Diploid calls on chrY?
5.2 years ago by dec986 ▴ 370
2
votes
6
replies
1.7k
views
Diploid calls on chrY?
genome vcf
updated 5.2 years ago by 16k • written 5.2 years ago by ▴ 370
0
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1
reply
1.7k
views
Comment: C: Diploid calls on chrY?
5.2 years ago by dec986 ▴ 370
0
votes
1
reply
2.8k
views
Comment: C: samtools sort doesn't finish sorting bam file, just hangs for hours
5.4 years ago by dec986 ▴ 370
4
votes
6
replies
2.8k
views
samtools sort doesn't finish sorting bam file, just hangs for hours
samtools
5.4 years ago by dec986 ▴ 370
0
votes
5
replies
2.7k
views
Zero Counts for many genes in 1 replicate, why?
cufflinks RNA-Seq
updated 16 months ago by 43k • written 8.8 years ago by ▴ 370
3
votes
2
replies
1.3k
views
Measure Sequencing Depth in aligned BAM file
RNA-Seq
updated 5.7 years ago by 20 • written 5.8 years ago by ▴ 370
1
vote
5
replies
3.5k
views
Differential Expression with Ballgown
RNA-Seq R
updated 5.7 years ago by 20 • written 5.7 years ago by ▴ 370
1
vote
10
replies
5.4k
views
how to get counts/TPM/etc. from stringtie?
RNA-Seq
updated 5.7 years ago by • 0 • written 5.7 years ago by ▴ 370
0
votes
1
reply
5.4k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
5.7 years ago by dec986 ▴ 370
0
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1
reply
5.4k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
5.7 years ago by dec986 ▴ 370
0
votes
1
reply
5.4k
views
Comment: C: how to get counts/TPM/etc. from stringtie?
5.7 years ago by dec986 ▴ 370
0
votes
0
replies
3.5k
views
Comment: C: Differential Expression with Ballgown
5.7 years ago by dec986 ▴ 370
0
votes
1
reply
3.5k
views
Comment: C: Differential Expression with Ballgown
5.7 years ago by dec986 ▴ 370
0
votes
1
reply
2.2k
views
Comment: C: R: Ballgown load fails
5.7 years ago by dec986 ▴ 370
2
votes
3
replies
2.2k
views
R: Ballgown load fails
RNA-Seq R software error
5.7 years ago by dec986 ▴ 370
0
votes
1
reply
4.3k
views
Comment: C: STAR Alignment Score reduced after trimming
5.8 years ago by dec986 ▴ 370
2
votes
1
reply
1.5k
views
samtools stats typical ranges and explicit definitions
samtools RNA-Seq
5.8 years ago by dec986 ▴ 370
4
votes
1
reply
3.4k
views
Meaning of Decimal points in ENST notation
rna-seq
updated 5.8 years ago by ▴ 640 • written 5.8 years ago by ▴ 370
0
votes
1
reply
11k
views
Comment: C: Automating Gorilla And/Or Revigo Analysis
6.0 years ago by dec986 ▴ 370
0
votes
0
replies
1.8k
views
MSigDB gene set enrichment analysis
gene ontology gsea
6.0 years ago by dec986 ▴ 370
0
votes
0
replies
2.2k
views
Comment: C: [Opinion] - What alignment software do you use?
6.1 years ago by dec986 ▴ 370
3
votes
3
replies
2.2k
views
Answer: A: [Opinion] - What alignment software do you use?
6.1 years ago by dec986 ▴ 370
0
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0
replies
5.2k
views
Comment: C: Differentially methylated regions: Easy & Fast Identification and ANnoTation
6.1 years ago by dec986 ▴ 370
0
votes
0
replies
1.6k
views
Choice of Gene Length in TPM Calculations
RNA-Seq tpm
6.2 years ago by dec986 ▴ 370
0
votes
2
replies
1.2k
views
Creating genome alignment
STAR RNA-Seq
updated 6.2 years ago by ▴ 470 • written 6.2 years ago by ▴ 370
0
votes
0
replies
4.3k
views
Comment: C: STAR Alignment Score reduced after trimming
6.2 years ago by dec986 ▴ 370
0
votes
1
reply
4.3k
views
Comment: C: STAR Alignment Score reduced after trimming
6.2 years ago by dec986 ▴ 370
8
votes
8
replies
4.3k
views
STAR Alignment Score reduced after trimming
STAR RNA-Seq
updated 6.2 years ago by 104k • written 6.2 years ago by ▴ 370
8
votes
1
reply
5.3k
views
STAR => featureCounts pipeline
RNA-Seq
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 370
3
votes
1
reply
1.4k
views
Trimmomatic destroys right-hand paired-end sequences, how to avoid?
trimmomatic qc
updated 6.2 years ago by ★ 3.1k • written 6.2 years ago by ▴ 370
5
votes
3
replies
1.4k
views
Cannot match machine name with Machine Type
RNA-Seq fastq trimmomatic qc
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 370
6
votes
11
replies
6.3k
views
stringtie cannot recognize Gencode GTF
RNA-Seq stringtie gencode
updated 6.3 years ago by ▴ 130 • written 6.3 years ago by ▴ 370
0
votes
0
replies
6.3k
views
Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by dec986 ▴ 370
0
votes
1
reply
6.3k
views
Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by dec986 ▴ 370
0
votes
1
reply
6.3k
views
Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by dec986 ▴ 370
0
votes
0
replies
6.3k
views
Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by dec986 ▴ 370
0
votes
0
replies
6.3k
views
Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by dec986 ▴ 370
208 results • Page 3 of 5
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