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5
votes
8
replies
2.0k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq DNA-Seq contamination QC
updated 7 months ago by • 0 • written 3.7 years ago by ▴ 230
0
votes
0
replies
617
views
Comment: Comment: How to convert Kallisto output to Salmon?
10 months ago by from the mountains ▴ 230
0
votes
1
reply
617
views
Comment: Comment: How to convert Kallisto output to Salmon?
10 months ago by from the mountains ▴ 230
2
votes
4
replies
617
views
How to convert Kallisto output to Salmon?
quantification rnaseq pseudo-alignment
10 months ago by from the mountains ▴ 230
0
votes
0
replies
762
views
Comment: Comment: clarifying head-to-head and tail-to-tail inversions
19 months ago by from the mountains ▴ 230
3
votes
2
replies
762
views
clarifying head-to-head and tail-to-tail inversions
SV delly
19 months ago by from the mountains ▴ 230
0
votes
1
reply
888
views
Comment: Comment: add INFO tag to vcf with bcftools
updated 29 days ago by 43k • written 24 months ago by ▴ 230
1
vote
3
replies
888
views
add INFO tag to vcf with bcftools
bcftools vcf
updated 29 days ago by 43k • written 2.0 years ago by ▴ 230
0
votes
0
replies
20k
views
Comment: Comment: Update 'ID' column in VCF file using BCFtools annotate
2.5 years ago by from the mountains ▴ 230
1
vote
0
replies
4.7k
views
Comment: Comment: bcftools multiallelic split not working
2.7 years ago by from the mountains ▴ 230
13
votes
8
replies
4.7k
views
bcftools multiallelic split not working
bcftools vcf
updated 7 months ago by 43k • written 2.7 years ago by ▴ 230
0
votes
0
replies
825
views
Comment: Comment: Making sense of genotype calculation equations
2.7 years ago by from the mountains ▴ 230
1
vote
1
reply
1.3k
views
getting paired end datasets from SRA
NCBI SRA
updated 2.7 years ago by 88k • written 2.7 years ago by ▴ 230
1
vote
2
replies
825
views
Making sense of genotype calculation equations
modeling concordance conpair
2.7 years ago by from the mountains ▴ 230
0
votes
0
replies
994
views
Comment: Comment: How to extract reads for HLAscan
2.8 years ago by from the mountains ▴ 230
0
votes
2
replies
994
views
How to extract reads for HLAscan
HLA genotyping NGS
2.8 years ago by from the mountains ▴ 230
3
votes
1
reply
5.5k
views
Answer: A: How to get real cell names from Seurat Object?
3.2 years ago by from the mountains ▴ 230
0
votes
0
replies
3.8k
views
Comment: C: Qualimap out of memory
3.3 years ago by from the mountains ▴ 230
0
votes
0
replies
3.3k
views
Comment: C: Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
3.3 years ago by from the mountains ▴ 230
0
votes
0
replies
897
views
ReadsPipelineSpark marking duplicates differently than MarkDuplicates
alignment gatk DNA-Seq
3.4 years ago by from the mountains ▴ 230
0
votes
1
reply
2.0k
views
Comment: C: looking for tools to detect RNA contamination in DNA
3.7 years ago by from the mountains ▴ 230
0
votes
1
reply
2.0k
views
Comment: C: looking for tools to detect RNA contamination in DNA
3.7 years ago by from the mountains ▴ 230
0
votes
0
replies
1.1k
views
requirements for qualimap gff file
QC exome
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 230
0
votes
0
replies
1.3k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
3.8 years ago by from the mountains ▴ 230
1
vote
2
replies
1.3k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
3.8 years ago by from the mountains ▴ 230
0
votes
0
replies
813
views
Comment: C: having trouble extracting paired reads from bam file
3.9 years ago by from the mountains ▴ 230
0
votes
1
reply
813
views
Comment: C: having trouble extracting paired reads from bam file
3.9 years ago by from the mountains ▴ 230
2
votes
4
replies
813
views
having trouble extracting paired reads from bam file
bam samtools alignment
3.9 years ago by from the mountains ▴ 230
0
votes
0
replies
7.6k
views
Comment: C: How can you convert a GATK interval_list file into a BED file
3.9 years ago by from the mountains ▴ 230
0
votes
1
reply
615
views
alignment strategies for rna fusion
RNA-Seq fusion alignment bowtie2
4.0 years ago by from the mountains ▴ 230
2
votes
1
reply
2.4k
views
STARsolo read1 length greater than cell barcode length and UMI length
RNA-Seq alignment single cell
4.2 years ago by from the mountains ▴ 230
1
vote
0
replies
9.0k
views
Answer: A: fastest UMAP method
4.5 years ago by from the mountains ▴ 230
1
vote
0
replies
4.8k
views
Comment: C: Seurat integrated analysis with replicates
4.6 years ago by from the mountains ▴ 230
0
votes
1
reply
4.8k
views
Comment: C: Seurat integrated analysis with replicates
4.7 years ago by from the mountains ▴ 230
3
votes
0
replies
8.3k
views
Comment: C: How to merge multiple single cell sequencing data after processing by CellRanger
4.7 years ago by from the mountains ▴ 230
0
votes
1
reply
4.8k
views
Comment: C: Seurat integrated analysis with replicates
4.7 years ago by from the mountains ▴ 230
6
votes
6
replies
4.8k
views
Seurat integrated analysis with replicates
RNA-Seq R single cell dropseq
updated 4.7 years ago by ★ 16k • written 4.7 years ago by ▴ 230
0
votes
1
reply
5.3k
views
Comment: C: How can I convert VCF to HGVS format?
4.7 years ago by from the mountains ▴ 230
0
votes
0
replies
4.5k
views
Comment: A: bwa mem: fail to locate the index files
4.8 years ago by from the mountains ▴ 230
2
votes
2
replies
2.6k
views
pacbio-illumina hybrid assemblies
assembly illumina pacbio hybrid assembly
updated 4.9 years ago by ▴ 80 • written 5.7 years ago by ▴ 230
10
votes
8
replies
18k
views
6 follow
How do I run Tophat?
tophat bowtie
updated 23 months ago by 43k • written 9.1 years ago by ▴ 230
2
votes
2
replies
1.8k
views
How to change filtering parameters in gff3 -> gtf conversion using gffread?
software error data formatting
5.5 years ago by from the mountains ▴ 230
0
votes
0
replies
1.8k
views
Comment: C: How to change filtering parameters in gff3 -> gtf conversion using gffread?
5.5 years ago by from the mountains ▴ 230
1
vote
1
reply
1.1k
views
any tool to join reads regardless of overlap?
merging
6.1 years ago by from the mountains ▴ 230
0
votes
0
replies
3.7k
views
Comment: C: bedtools getfasta chromosome not found
6.2 years ago by from the mountains ▴ 230
0
votes
0
replies
3.7k
views
Comment: A: bedtools getfasta chromosome not found
6.2 years ago by from the mountains ▴ 230
2
votes
8
replies
3.7k
views
bedtools getfasta chromosome not found
software error sequencing bedtools
6.2 years ago by from the mountains ▴ 230
0
votes
1
reply
3.7k
views
Comment: C: bedtools getfasta chromosome not found
6.2 years ago by from the mountains ▴ 230
0
votes
0
replies
3.7k
views
Comment: C: bedtools getfasta chromosome not found
6.2 years ago by from the mountains ▴ 230
0
votes
1
reply
2.3k
views
Comment: C: genemark-es gene-finding with reference and annotation
6.2 years ago by from the mountains ▴ 230
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