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0
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0
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390
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Comment: Comment: clarifying head-to-head and tail-to-tail inversions
8 months ago by from the mountains ▴ 200
3
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2
replies
390
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clarifying head-to-head and tail-to-tail inversions
SV delly
8 months ago by from the mountains ▴ 200
0
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0
replies
445
views
Comment: Comment: add INFO tag to vcf with bcftools
12 months ago by from the mountains ▴ 200
1
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2
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445
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add INFO tag to vcf with bcftools
bcftools vcf
12 months ago by from the mountains ▴ 200
0
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0
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17k
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Comment: Comment: Update 'ID' column in VCF file using BCFtools annotate
18 months ago by from the mountains ▴ 200
1
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0
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2.7k
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Comment: Comment: bcftools multiallelic split not working
21 months ago by from the mountains ▴ 200
6
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6
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2.7k
views
bcftools multiallelic split not working
bcftools vcf
updated 16 months ago by ★ 3.1k • written 21 months ago by ▴ 200
0
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0
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597
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Comment: Comment: Making sense of genotype calculation equations
21 months ago by from the mountains ▴ 200
1
vote
1
reply
846
views
getting paired end datasets from SRA
NCBI SRA
updated 21 months ago by 85k • written 21 months ago by ▴ 200
1
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2
replies
597
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Making sense of genotype calculation equations
modeling concordance conpair
21 months ago by from the mountains ▴ 200
0
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0
replies
701
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Comment: Comment: How to extract reads for HLAscan
22 months ago by from the mountains ▴ 200
0
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2
replies
701
views
How to extract reads for HLAscan
HLA genotyping NGS
22 months ago by from the mountains ▴ 200
3
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1
reply
3.6k
views
Answer: A: How to get real cell names from Seurat Object?
2.3 years ago by from the mountains ▴ 200
0
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0
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2.9k
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Comment: C: Qualimap out of memory
2.4 years ago by from the mountains ▴ 200
0
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0
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2.5k
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Comment: C: Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
2.4 years ago by from the mountains ▴ 200
0
votes
0
replies
756
views
ReadsPipelineSpark marking duplicates differently than MarkDuplicates
alignment gatk DNA-Seq
2.5 years ago by from the mountains ▴ 200
5
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7
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1.4k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq DNA-Seq contamination QC
2.8 years ago by from the mountains ▴ 200
0
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1
reply
1.4k
views
Comment: C: looking for tools to detect RNA contamination in DNA
2.8 years ago by from the mountains ▴ 200
0
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1
reply
1.4k
views
Comment: C: looking for tools to detect RNA contamination in DNA
2.8 years ago by from the mountains ▴ 200
0
votes
0
replies
899
views
requirements for qualimap gff file
QC exome
updated 2.9 years ago by 39k • written 2.9 years ago by ▴ 200
0
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0
replies
1.0k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
2.9 years ago by from the mountains ▴ 200
1
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2
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1.0k
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Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
2.9 years ago by from the mountains ▴ 200
0
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0
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649
views
Comment: C: having trouble extracting paired reads from bam file
3.0 years ago by from the mountains ▴ 200
0
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1
reply
649
views
Comment: C: having trouble extracting paired reads from bam file
3.0 years ago by from the mountains ▴ 200
2
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4
replies
649
views
having trouble extracting paired reads from bam file
bam samtools alignment
3.0 years ago by from the mountains ▴ 200
0
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0
replies
7.0k
views
Comment: C: How can you convert a GATK interval_list file into a BED file
3.0 years ago by from the mountains ▴ 200
0
votes
1
reply
471
views
alignment strategies for rna fusion
RNA-Seq fusion alignment bowtie2
3.0 years ago by from the mountains ▴ 200
0
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1
reply
2.0k
views
STARsolo read1 length greater than cell barcode length and UMI length
RNA-Seq alignment single cell
3.2 years ago by from the mountains ▴ 200
1
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0
replies
6.4k
views
Answer: A: fastest UMAP method
3.6 years ago by from the mountains ▴ 200
1
vote
0
replies
3.9k
views
Comment: C: Seurat integrated analysis with replicates
3.7 years ago by from the mountains ▴ 200
0
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1
reply
3.9k
views
Comment: C: Seurat integrated analysis with replicates
3.7 years ago by from the mountains ▴ 200
1
vote
0
replies
7.2k
views
Comment: C: How to merge multiple single cell sequencing data after processing by CellRanger
3.7 years ago by from the mountains ▴ 200
0
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1
reply
3.9k
views
Comment: C: Seurat integrated analysis with replicates
3.7 years ago by from the mountains ▴ 200
6
votes
6
replies
3.9k
views
Seurat integrated analysis with replicates
RNA-Seq R single cell dropseq
updated 3.7 years ago by ★ 14k • written 3.7 years ago by ▴ 200
0
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1
reply
4.3k
views
Comment: C: How can I convert VCF to HGVS format?
3.8 years ago by from the mountains ▴ 200
0
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0
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3.9k
views
Comment: A: bwa mem: fail to locate the index files
3.8 years ago by from the mountains ▴ 200
2
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2
replies
2.4k
views
pacbio-illumina hybrid assemblies
assembly illumina pacbio hybrid assembly
updated 3.9 years ago by ▴ 80 • written 4.7 years ago by ▴ 200
10
votes
8
replies
17k
views
6 follow
How do I run Tophat?
tophat bowtie
updated 11 months ago by 39k • written 8.2 years ago by ▴ 200
2
votes
2
replies
1.6k
views
How to change filtering parameters in gff3 -> gtf conversion using gffread?
software error data formatting
4.6 years ago by from the mountains ▴ 200
0
votes
0
replies
1.6k
views
Comment: C: How to change filtering parameters in gff3 -> gtf conversion using gffread?
4.6 years ago by from the mountains ▴ 200
1
vote
1
reply
931
views
any tool to join reads regardless of overlap?
merging
5.1 years ago by from the mountains ▴ 200
0
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0
replies
3.2k
views
Comment: C: bedtools getfasta chromosome not found
5.2 years ago by from the mountains ▴ 200
2
votes
8
replies
3.2k
views
bedtools getfasta chromosome not found
software error sequencing bedtools
5.2 years ago by from the mountains ▴ 200
0
votes
0
replies
3.2k
views
Comment: A: bedtools getfasta chromosome not found
5.2 years ago by from the mountains ▴ 200
0
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1
reply
3.2k
views
Comment: C: bedtools getfasta chromosome not found
5.2 years ago by from the mountains ▴ 200
0
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0
replies
3.2k
views
Comment: C: bedtools getfasta chromosome not found
5.2 years ago by from the mountains ▴ 200
0
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1
reply
2.0k
views
Comment: C: genemark-es gene-finding with reference and annotation
5.3 years ago by from the mountains ▴ 200
1
vote
3
replies
2.0k
views
genemark-es gene-finding with reference and annotation
DNA-seq assembly gene prediction
updated 5.3 years ago by 14k • written 5.3 years ago by ▴ 200
1
vote
1
reply
1.6k
views
BBMerge saving unmerged reads
bbmerge sequencing
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 200
0
votes
1
reply
5.6k
views
Comment: C: Is biomaRt service down?
5.6 years ago by from the mountains ▴ 200
78 results • Page 1 of 2
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