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3
votes
1
reply
600
views
samtools tview special character
samtools bam rna
updated 8 months ago by 166k • written 8 months ago by ▴ 250
5
votes
8
replies
2.8k
views
looking for tools to detect RNA contamination in DNA
RNA-Seq DNA-Seq contamination QC
updated 23 months ago by ▴ 10 • written 5.1 years ago by ▴ 250
0
votes
0
replies
1.2k
views
Comment: Comment: How to convert Kallisto output to Salmon?
2.2 years ago by from the mountains ▴ 250
0
votes
1
reply
1.2k
views
Comment: Comment: How to convert Kallisto output to Salmon?
2.2 years ago by from the mountains ▴ 250
2
votes
4
replies
1.2k
views
How to convert Kallisto output to Salmon?
quantification rnaseq pseudo-alignment
2.2 years ago by from the mountains ▴ 250
0
votes
0
replies
1.8k
views
Comment: Comment: clarifying head-to-head and tail-to-tail inversions
3.0 years ago by from the mountains ▴ 250
3
votes
2
replies
1.8k
views
clarifying head-to-head and tail-to-tail inversions
SV delly
3.0 years ago by from the mountains ▴ 250
0
votes
1
reply
1.6k
views
Comment: Comment: add INFO tag to vcf with bcftools
updated 17 months ago by 45k • written 3.4 years ago by ▴ 250
1
vote
3
replies
1.6k
views
add INFO tag to vcf with bcftools
bcftools vcf
updated 17 months ago by 45k • written 3.4 years ago by ▴ 250
1
vote
0
replies
24k
views
Comment: Comment: Update 'ID' column in VCF file using BCFtools annotate
3.8 years ago by from the mountains ▴ 250
1
vote
0
replies
8.2k
views
Comment: Comment: bcftools multiallelic split not working
4.0 years ago by from the mountains ▴ 250
15
votes
8
replies
8.2k
views
bcftools multiallelic split not working
bcftools vcf
updated 2.0 years ago by 45k • written 4.1 years ago by ▴ 250
0
votes
0
replies
1.2k
views
Comment: Comment: Making sense of genotype calculation equations
4.1 years ago by from the mountains ▴ 250
1
vote
1
reply
1.8k
views
getting paired end datasets from SRA
NCBI SRA
updated 4.1 years ago by 89k • written 4.1 years ago by ▴ 250
1
vote
2
replies
1.2k
views
Making sense of genotype calculation equations
modeling concordance conpair
4.1 years ago by from the mountains ▴ 250
0
votes
0
replies
1.5k
views
Comment: Comment: How to extract reads for HLAscan
4.2 years ago by from the mountains ▴ 250
0
votes
2
replies
1.5k
views
How to extract reads for HLAscan
HLA genotyping NGS
4.2 years ago by from the mountains ▴ 250
3
votes
1
reply
7.2k
views
Answer: A: How to get real cell names from Seurat Object?
4.6 years ago by from the mountains ▴ 250
0
votes
0
replies
4.8k
views
Comment: C: Qualimap out of memory
4.7 years ago by from the mountains ▴ 250
0
votes
0
replies
4.2k
views
Comment: C: Convert VCF4.1 to VCF4.2 using bcftools (preferrably)
4.7 years ago by from the mountains ▴ 250
0
votes
0
replies
1.1k
views
ReadsPipelineSpark marking duplicates differently than MarkDuplicates
alignment gatk DNA-Seq
4.8 years ago by from the mountains ▴ 250
0
votes
1
reply
2.8k
views
Comment: C: looking for tools to detect RNA contamination in DNA
5.1 years ago by from the mountains ▴ 250
0
votes
1
reply
2.8k
views
Comment: C: looking for tools to detect RNA contamination in DNA
5.1 years ago by from the mountains ▴ 250
0
votes
0
replies
1.3k
views
requirements for qualimap gff file
QC exome
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 250
0
votes
0
replies
2.0k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
5.2 years ago by from the mountains ▴ 250
1
vote
2
replies
2.0k
views
Comment: C: Extract out lines with 's__' into a new file together with first two lines of th
5.2 years ago by from the mountains ▴ 250
0
votes
0
replies
1.2k
views
Comment: C: having trouble extracting paired reads from bam file
5.3 years ago by from the mountains ▴ 250
0
votes
1
reply
1.2k
views
Comment: C: having trouble extracting paired reads from bam file
5.3 years ago by from the mountains ▴ 250
2
votes
4
replies
1.2k
views
having trouble extracting paired reads from bam file
bam samtools alignment
5.3 years ago by from the mountains ▴ 250
0
votes
0
replies
8.4k
views
Comment: C: How can you convert a GATK interval_list file into a BED file
5.3 years ago by from the mountains ▴ 250
0
votes
1
reply
867
views
alignment strategies for rna fusion
RNA-Seq fusion alignment bowtie2
5.3 years ago by from the mountains ▴ 250
2
votes
1
reply
3.0k
views
STARsolo read1 length greater than cell barcode length and UMI length
RNA-Seq alignment single cell
5.5 years ago by from the mountains ▴ 250
1
vote
0
replies
13k
views
Answer: A: fastest UMAP method
5.9 years ago by from the mountains ▴ 250
1
vote
0
replies
5.8k
views
Comment: C: Seurat integrated analysis with replicates
6.0 years ago by from the mountains ▴ 250
0
votes
1
reply
5.8k
views
Comment: C: Seurat integrated analysis with replicates
6.0 years ago by from the mountains ▴ 250
3
votes
0
replies
9.6k
views
Comment: C: How to merge multiple single cell sequencing data after processing by CellRanger
6.0 years ago by from the mountains ▴ 250
0
votes
1
reply
5.8k
views
Comment: C: Seurat integrated analysis with replicates
6.0 years ago by from the mountains ▴ 250
6
votes
6
replies
5.8k
views
Seurat integrated analysis with replicates
RNA-Seq R single cell dropseq
updated 6.0 years ago by ★ 19k • written 6.0 years ago by ▴ 250
0
votes
1
reply
7.0k
views
Comment: C: How can I convert VCF to HGVS format?
6.1 years ago by from the mountains ▴ 250
0
votes
0
replies
5.3k
views
Comment: A: bwa mem: fail to locate the index files
6.2 years ago by from the mountains ▴ 250
2
votes
2
replies
3.0k
views
pacbio-illumina hybrid assemblies
assembly illumina pacbio hybrid assembly
updated 6.3 years ago by ▴ 80 • written 7.0 years ago by ▴ 250
10
votes
8
replies
19k
views
6 follow
How do I run Tophat?
tophat bowtie
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 250
2
votes
2
replies
2.3k
views
How to change filtering parameters in gff3 -> gtf conversion using gffread?
software error data formatting
6.9 years ago by from the mountains ▴ 250
0
votes
0
replies
2.3k
views
Comment: C: How to change filtering parameters in gff3 -> gtf conversion using gffread?
6.9 years ago by from the mountains ▴ 250
1
vote
1
reply
1.4k
views
any tool to join reads regardless of overlap?
merging
7.4 years ago by from the mountains ▴ 250
0
votes
0
replies
4.5k
views
Comment: C: bedtools getfasta chromosome not found
7.5 years ago by from the mountains ▴ 250
2
votes
8
replies
4.5k
views
bedtools getfasta chromosome not found
software error sequencing bedtools
7.5 years ago by from the mountains ▴ 250
0
votes
0
replies
4.5k
views
Comment: A: bedtools getfasta chromosome not found
7.5 years ago by from the mountains ▴ 250
0
votes
1
reply
4.5k
views
Comment: C: bedtools getfasta chromosome not found
7.5 years ago by from the mountains ▴ 250
0
votes
0
replies
4.5k
views
Comment: C: bedtools getfasta chromosome not found
7.5 years ago by from the mountains ▴ 250
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