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643
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Comment: Comment: Gene Expression Timeline Analysis for N=1
3 months ago by ATRX ★ 1.2k
2
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2
replies
643
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Gene Expression Timeline Analysis for N=1
Analysis Gene Expression
3 months ago by ATRX ★ 1.2k
0
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0
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856
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Comment: Comment: Best way of visualzing RNA-seq bam files
7 months ago by ATRX ★ 1.2k
0
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0
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856
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Comment: Comment: Best way of visualzing RNA-seq bam files
7 months ago by ATRX ★ 1.2k
1
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4
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856
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Best way of visualzing RNA-seq bam files
IGV
7 months ago by ATRX ★ 1.2k
0
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1
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1.4k
views
Comment: Comment: Create a fasta and gtf file
8 months ago by ATRX ★ 1.2k
0
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0
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1.4k
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Comment: Comment: Create a fasta and gtf file
8 months ago by ATRX ★ 1.2k
0
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1
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1.4k
views
Comment: Comment: Create a fasta and gtf file
8 months ago by ATRX ★ 1.2k
0
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0
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2.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
3
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6
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1.4k
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Create a fasta and gtf file
gtf human genome fasta
updated 8 months ago by 9.3k • written 8 months ago by ★ 1.2k
1
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0
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653
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Answer: Answer: Regarding to Two-color microarray data analysis (DGE)
8 months ago by ATRX ★ 1.2k
0
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1
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2.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
11
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12
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2.3k
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dedup STAR transcriptome file using umi_tools
rna-seq umi transcriptome umi_tools
8 months ago by ATRX ★ 1.2k
0
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0
replies
2.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
0
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1
reply
2.3k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
0
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1
reply
2.3k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
0
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1
reply
2.3k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
8 months ago by ATRX ★ 1.2k
0
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1
reply
1.3k
views
Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
10 months ago by ATRX ★ 1.2k
0
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1
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1.3k
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Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
10 months ago by ATRX ★ 1.2k
1
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5
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1.3k
views
rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
RNA-seq gencode rRNA
updated 10 months ago by 45k • written 10 months ago by ★ 1.2k
0
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0
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706
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Comment: Comment: Infer UMI from fastq files
12 months ago by ATRX ★ 1.2k
2
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2
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706
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Infer UMI from fastq files
bcl2fastq transcriptome RNA-seq UMI
12 months ago by ATRX ★ 1.2k
0
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1
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1.3k
views
Answer: A: Microarray data from different sets but same platform
4.4 years ago by ATRX ★ 1.2k
0
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0
replies
853
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Bowtie2 Alignment Summary vs Samtools
alignment bowtie2 samtools
4.4 years ago by ATRX ★ 1.2k
0
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0
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2.2k
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Comment: C: Extract the overlapping paired-end reads
4.5 years ago by ATRX ★ 1.2k
0
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1
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2.2k
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Comment: C: Extract the overlapping paired-end reads
4.5 years ago by ATRX ★ 1.2k
3
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6
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2.2k
views
Extract the overlapping paired-end reads
samtools paired-end reads
4.5 years ago by ATRX ★ 1.2k
0
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2
replies
1.5k
views
Demultiplexing inDrop dataset
RNA-Seq single-cell in-Drop dataset
updated 7 months ago by • 0 • written 5.6 years ago by ★ 1.2k
1
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1
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5.3k
views
Comment: Comment: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
updated 9 weeks ago by 152k • written 6.1 years ago by ★ 1.2k
1
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0
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4.0k
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Answer: A: WGCNA cannot be done to compare two conditions?
6.1 years ago by ATRX ★ 1.2k
4
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1
reply
5.3k
views
Answer: A: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
6.1 years ago by ATRX ★ 1.2k
0
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1
reply
1.8k
views
Public RNA-Seq and Microarray samples from same tissue
Microarray RNA-Seq Batch-Effect
updated 15 months ago by 45k • written 9.1 years ago by ★ 1.2k
1
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0
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2.3k
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Tool: DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq scRNA-Seq R Batch-Effect
updated 14 months ago by 45k • written 8.1 years ago by ★ 1.2k
45
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8
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15k
views
Difference between the Fasta files from UCSC and Gencode/Ensembl
genome-build RNA-Seq ChIP-Seq
updated 8.5 years ago by ▴ 610 • written 8.9 years ago by ★ 1.2k
0
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0
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5.4k
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Comment: C: ComBat (SVA) Application - Two Technical Effects
8.8 years ago by ATRX ★ 1.2k
0
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1
reply
5.4k
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Comment: C: ComBat (SVA) Application - Two Technical Effects
8.8 years ago by ATRX ★ 1.2k
2
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1
reply
11k
views
DESeq2 design and interaction terms
RNA-Seq DESeq2 R
8.8 years ago by ATRX ★ 1.2k
5
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3
replies
14k
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Answer: A: PCA tpm fpkm
8.9 years ago by ATRX ★ 1.2k
1
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0
replies
15k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.9 years ago by ATRX ★ 1.2k
0
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0
replies
15k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.9 years ago by ATRX ★ 1.2k
0
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0
replies
74k
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Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.9 years ago by ATRX ★ 1.2k
0
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2
replies
74k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.9 years ago by ATRX ★ 1.2k
3
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1
reply
74k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.9 years ago by ATRX ★ 1.2k
8
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0
replies
74k
views
Answer: A: Recommended cutoff for FDR - 0.05 or 0.1
8.9 years ago by ATRX ★ 1.2k
0
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0
replies
2.9k
views
Answer: A: chip-seq (histone modifications) and rna-seq data for benchmarking
8.9 years ago by ATRX ★ 1.2k
1
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1
reply
4.2k
views
Comment: C: List of genes expressed in Brain and different tissues
8.9 years ago by ATRX ★ 1.2k
0
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0
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4.2k
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Comment: C: List of genes expressed in Brain and different tissues
8.9 years ago by ATRX ★ 1.2k
4
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6
replies
4.2k
views
List of genes expressed in Brain and different tissues
RNA-Seq genes brain
updated 8.9 years ago by 48k • written 8.9 years ago by ★ 1.2k
0
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0
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2.7k
views
Comment: C: Does differential binding analysis across different ChIP-Seq samples makes sense
8.9 years ago by ATRX ★ 1.2k
2
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3
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2.7k
views
Does differential binding analysis across different ChIP-Seq samples makes sense ?
ChIP-Seq
updated 8.9 years ago by 105k • written 8.9 years ago by ★ 1.2k
107 results • Page 1 of 3
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