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365
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Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
10 days ago by Ar ★ 1.1k
0
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1
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365
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Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
10 days ago by Ar ★ 1.1k
1
vote
5
replies
365
views
rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
RNA-seq gencode rRNA
updated 9 days ago by 44k • written 10 days ago by ★ 1.1k
0
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0
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341
views
Comment: Comment: Infer UMI from fastq files
11 weeks ago by Ar ★ 1.1k
2
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2
replies
341
views
Infer UMI from fastq files
bcl2fastq transcriptome RNA-seq UMI
11 weeks ago by Ar ★ 1.1k
0
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1
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949
views
Answer: A: Microarray data from different sets but same platform
3.5 years ago by Ar ★ 1.1k
0
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0
replies
741
views
Bowtie2 Alignment Summary vs Samtools
alignment bowtie2 samtools
3.5 years ago by Ar ★ 1.1k
0
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0
replies
1.9k
views
Comment: C: Extract the overlapping paired-end reads
3.7 years ago by Ar ★ 1.1k
0
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1
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1.9k
views
Comment: C: Extract the overlapping paired-end reads
3.7 years ago by Ar ★ 1.1k
3
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6
replies
1.9k
views
Extract the overlapping paired-end reads
samtools paired-end reads
3.7 years ago by Ar ★ 1.1k
0
votes
1
reply
1.2k
views
Demultiplexing inDrop dataset
RNA-Seq single-cell in-Drop dataset
updated 4.7 years ago by • 0 • written 4.7 years ago by ★ 1.1k
1
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1
reply
4.1k
views
Comment: C: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
5.3 years ago by Ar ★ 1.1k
1
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0
replies
3.6k
views
Answer: A: WGCNA cannot be done to compare two conditions?
5.3 years ago by Ar ★ 1.1k
4
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1
reply
4.1k
views
Answer: A: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
5.3 years ago by Ar ★ 1.1k
0
votes
1
reply
1.7k
views
Public RNA-Seq and Microarray samples from same tissue
Microarray RNA-Seq Batch-Effect
updated 5 months ago by 44k • written 8.3 years ago by ★ 1.1k
1
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0
replies
2.2k
views
Tool: DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq scRNA-Seq R Batch-Effect
updated 4 months ago by 44k • written 7.2 years ago by ★ 1.1k
45
votes
8
replies
13k
views
Difference between the Fasta files from UCSC and Gencode/Ensembl
genome-build RNA-Seq ChIP-Seq
updated 7.7 years ago by ▴ 600 • written 8.1 years ago by ★ 1.1k
0
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0
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4.9k
views
Comment: C: ComBat (SVA) Application - Two Technical Effects
8.0 years ago by Ar ★ 1.1k
0
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1
reply
4.9k
views
Comment: C: ComBat (SVA) Application - Two Technical Effects
8.0 years ago by Ar ★ 1.1k
2
votes
1
reply
11k
views
DESeq2 design and interaction terms
RNA-Seq DESeq2 R
8.0 years ago by Ar ★ 1.1k
5
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3
replies
13k
views
Answer: A: PCA tpm fpkm
8.0 years ago by Ar ★ 1.1k
1
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0
replies
13k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.0 years ago by Ar ★ 1.1k
0
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0
replies
13k
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Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.0 years ago by Ar ★ 1.1k
0
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0
replies
62k
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Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.0 years ago by Ar ★ 1.1k
0
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2
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62k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.1 years ago by Ar ★ 1.1k
2
votes
1
reply
62k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.1 years ago by Ar ★ 1.1k
7
votes
0
replies
62k
views
Answer: A: Recommended cutoff for FDR - 0.05 or 0.1
8.1 years ago by Ar ★ 1.1k
0
votes
0
replies
2.6k
views
Answer: A: chip-seq (histone modifications) and rna-seq data for benchmarking
8.1 years ago by Ar ★ 1.1k
1
vote
1
reply
3.9k
views
Comment: C: List of genes expressed in Brain and different tissues
8.1 years ago by Ar ★ 1.1k
0
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0
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3.9k
views
Comment: C: List of genes expressed in Brain and different tissues
8.1 years ago by Ar ★ 1.1k
4
votes
6
replies
3.9k
views
List of genes expressed in Brain and different tissues
RNA-Seq genes brain
updated 8.1 years ago by 47k • written 8.1 years ago by ★ 1.1k
0
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0
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2.5k
views
Comment: C: Does differential binding analysis across different ChIP-Seq samples makes sense
8.1 years ago by Ar ★ 1.1k
2
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3
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2.5k
views
Does differential binding analysis across different ChIP-Seq samples makes sense ?
ChIP-Seq
updated 8.1 years ago by 104k • written 8.1 years ago by ★ 1.1k
0
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0
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2.9k
views
Job: Postdoc Position in Cancer Epigenomics, MD Anderson Cancer Center - Houston, USA
ChIP-Seq RNA-Seq R
updated 17 months ago by 44k • written 8.2 years ago by ★ 1.1k
0
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0
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1.8k
views
Comment: C: ENCODE 2016: Research Applications and Users Meeting
8.2 years ago by Ar ★ 1.1k
1
vote
2
replies
3.7k
views
Answer: A: The number of cluster in Kmean clustering
8.2 years ago by Ar ★ 1.1k
0
votes
1
reply
4.4k
views
Comment: C: what is the meaning of covariates in ComBat
8.2 years ago by Ar ★ 1.1k
0
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0
replies
29k
views
Comment: C: removing batch effects using ComBat and SVA
8.3 years ago by Ar ★ 1.1k
0
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1
reply
29k
views
Comment: C: removing batch effects using ComBat and SVA
8.3 years ago by Ar ★ 1.1k
0
votes
0
replies
2.9k
views
Comment: C: Transcription factor binding site prediction program/algorithm
8.3 years ago by Ar ★ 1.1k
2
votes
1
reply
2.9k
views
Answer: A: Transcription factor binding site prediction program/algorithm
8.3 years ago by Ar ★ 1.1k
2
votes
1
reply
29k
views
Comment: C: removing batch effects using ComBat and SVA
8.3 years ago by Ar ★ 1.1k
0
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0
replies
4.4k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
8.3 years ago by Ar ★ 1.1k
0
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1
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4.4k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
8.3 years ago by Ar ★ 1.1k
1
vote
1
reply
5.6k
views
Comment: C: What is the correct way of using GTEx, CCLE and HPA data?
8.3 years ago by Ar ★ 1.1k
0
votes
1
reply
5.9k
views
Comment: C: Length of transcripts of mm9
8.3 years ago by Ar ★ 1.1k
1
vote
1
reply
5.6k
views
Comment: C: What is the correct way of using GTEx, CCLE and HPA data?
8.3 years ago by Ar ★ 1.1k
0
votes
1
reply
5.9k
views
Answer: A: Length of transcripts of mm9
8.3 years ago by Ar ★ 1.1k
0
votes
1
reply
4.4k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
8.3 years ago by Ar ★ 1.1k
0
votes
1
reply
29k
views
Comment: C: removing batch effects using ComBat and SVA
8.3 years ago by Ar ★ 1.1k
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