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Comment: Comment: Best way of visualzing RNA-seq bam files
3 months ago by ATRX ★ 1.2k
0
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0
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603
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Comment: Comment: Best way of visualzing RNA-seq bam files
3 months ago by ATRX ★ 1.2k
1
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4
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603
views
Best way of visualzing RNA-seq bam files
IGV
3 months ago by ATRX ★ 1.2k
0
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1
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914
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Comment: Comment: Create a fasta and gtf file
3 months ago by ATRX ★ 1.2k
0
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0
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914
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Comment: Comment: Create a fasta and gtf file
3 months ago by ATRX ★ 1.2k
0
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1
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914
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Comment: Comment: Create a fasta and gtf file
3 months ago by ATRX ★ 1.2k
0
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0
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1.7k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
3
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6
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914
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Create a fasta and gtf file
gtf human genome fasta
updated 3 months ago by 9.1k • written 3 months ago by ★ 1.2k
1
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0
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420
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Answer: Answer: Regarding to Two-color microarray data analysis (DGE)
3 months ago by ATRX ★ 1.2k
0
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1
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1.7k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
11
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12
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1.7k
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dedup STAR transcriptome file using umi_tools
rna-seq umi transcriptome umi_tools
3 months ago by ATRX ★ 1.2k
0
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0
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1.7k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
0
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1
reply
1.7k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
0
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1
reply
1.7k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
0
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1
reply
1.7k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
3 months ago by ATRX ★ 1.2k
0
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1
reply
805
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Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
5 months ago by ATRX ★ 1.2k
0
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1
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805
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Comment: Comment: rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
5 months ago by ATRX ★ 1.2k
1
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5
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805
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rRNA in gencode gtf file and rRNA rate in the RNA-seq dataset
RNA-seq gencode rRNA
updated 5 months ago by 44k • written 5 months ago by ★ 1.2k
0
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0
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502
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Comment: Comment: Infer UMI from fastq files
7 months ago by ATRX ★ 1.2k
2
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2
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502
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Infer UMI from fastq files
bcl2fastq transcriptome RNA-seq UMI
7 months ago by ATRX ★ 1.2k
0
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1
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1.1k
views
Answer: A: Microarray data from different sets but same platform
4.0 years ago by ATRX ★ 1.2k
0
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0
replies
780
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Bowtie2 Alignment Summary vs Samtools
alignment bowtie2 samtools
4.0 years ago by ATRX ★ 1.2k
0
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0
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2.0k
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Comment: C: Extract the overlapping paired-end reads
4.1 years ago by ATRX ★ 1.2k
0
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1
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2.0k
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Comment: C: Extract the overlapping paired-end reads
4.1 years ago by ATRX ★ 1.2k
3
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6
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2.0k
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Extract the overlapping paired-end reads
samtools paired-end reads
4.1 years ago by ATRX ★ 1.2k
0
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2
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1.3k
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Demultiplexing inDrop dataset
RNA-Seq single-cell in-Drop dataset
updated 3 months ago by • 0 • written 5.2 years ago by ★ 1.2k
1
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1
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4.5k
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Comment: C: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
5.7 years ago by ATRX ★ 1.2k
1
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0
replies
3.8k
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Answer: A: WGCNA cannot be done to compare two conditions?
5.7 years ago by ATRX ★ 1.2k
4
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1
reply
4.5k
views
Answer: A: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
5.7 years ago by ATRX ★ 1.2k
0
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1
reply
1.8k
views
Public RNA-Seq and Microarray samples from same tissue
Microarray RNA-Seq Batch-Effect
updated 10 months ago by 44k • written 8.7 years ago by ★ 1.2k
1
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0
replies
2.2k
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Tool: DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq scRNA-Seq R Batch-Effect
updated 10 months ago by 44k • written 7.7 years ago by ★ 1.2k
45
votes
8
replies
14k
views
Difference between the Fasta files from UCSC and Gencode/Ensembl
genome-build RNA-Seq ChIP-Seq
updated 8.1 years ago by ▴ 610 • written 8.5 years ago by ★ 1.2k
0
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0
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5.1k
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Comment: C: ComBat (SVA) Application - Two Technical Effects
8.4 years ago by ATRX ★ 1.2k
0
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1
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5.1k
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Comment: C: ComBat (SVA) Application - Two Technical Effects
8.4 years ago by ATRX ★ 1.2k
2
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1
reply
11k
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DESeq2 design and interaction terms
RNA-Seq DESeq2 R
8.4 years ago by ATRX ★ 1.2k
5
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3
replies
14k
views
Answer: A: PCA tpm fpkm
8.5 years ago by ATRX ★ 1.2k
1
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0
replies
14k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.5 years ago by ATRX ★ 1.2k
0
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0
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14k
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Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
8.5 years ago by ATRX ★ 1.2k
0
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0
replies
68k
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Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.5 years ago by ATRX ★ 1.2k
0
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2
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68k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.5 years ago by ATRX ★ 1.2k
3
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1
reply
68k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
8.5 years ago by ATRX ★ 1.2k
8
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0
replies
68k
views
Answer: A: Recommended cutoff for FDR - 0.05 or 0.1
8.5 years ago by ATRX ★ 1.2k
0
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0
replies
2.7k
views
Answer: A: chip-seq (histone modifications) and rna-seq data for benchmarking
8.5 years ago by ATRX ★ 1.2k
1
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1
reply
4.0k
views
Comment: C: List of genes expressed in Brain and different tissues
8.5 years ago by ATRX ★ 1.2k
0
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0
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4.0k
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Comment: C: List of genes expressed in Brain and different tissues
8.5 years ago by ATRX ★ 1.2k
4
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6
replies
4.0k
views
List of genes expressed in Brain and different tissues
RNA-Seq genes brain
updated 8.5 years ago by 47k • written 8.5 years ago by ★ 1.2k
0
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0
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2.6k
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Comment: C: Does differential binding analysis across different ChIP-Seq samples makes sense
8.5 years ago by ATRX ★ 1.2k
2
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3
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2.6k
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Does differential binding analysis across different ChIP-Seq samples makes sense ?
ChIP-Seq
updated 8.5 years ago by 105k • written 8.5 years ago by ★ 1.2k
0
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0
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3.0k
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Job: Postdoc Position in Cancer Epigenomics, MD Anderson Cancer Center - Houston, USA
ChIP-Seq RNA-Seq R
updated 22 months ago by 44k • written 8.6 years ago by ★ 1.2k
0
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0
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1.8k
views
Comment: C: ENCODE 2016: Research Applications and Users Meeting
8.7 years ago by ATRX ★ 1.2k
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