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Why does Biopython's SeqIO.parse() truncate sequences when it encounters repeated bases?
biopython
updated 8 months ago by 21k • written 8 months ago by ▴ 140
0
votes
1
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1.8k
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How to load megacc output into R?
R Mega
updated 4.7 years ago by • 0 • written 7.9 years ago by ▴ 140
0
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1
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953
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Is there a suit of scripts to process CLUMPAK's output?
CLUMPAK Admixture
5.0 years ago by joreamayarom ▴ 140
1
vote
0
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1.8k
views
Comment: C: Problems when parsing VCF file with Python
7.4 years ago by joreamayarom ▴ 140
1
vote
2
replies
1.8k
views
Problems when parsing VCF file with Python
python vcf
updated 7.4 years ago by 101k • written 7.4 years ago by ▴ 140
0
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0
replies
1.3k
views
Stampy and malformed BAM files?
stampy mapping bam
7.5 years ago by joreamayarom ▴ 140
0
votes
2
replies
2.3k
views
How good are bwa-mem and stampy when dealing with low quality reads?
bwa mapping
7.5 years ago by joreamayarom ▴ 140
0
votes
1
reply
3.4k
views
Comment: C: Malformed BAM file produced by BWA
7.5 years ago by joreamayarom ▴ 140
1
vote
1
reply
3.4k
views
Comment: C: Malformed BAM file produced by BWA
7.5 years ago by joreamayarom ▴ 140
3
votes
6
replies
3.4k
views
Malformed BAM file produced by BWA
GATK Samtools Picard
updated 7.5 years ago by 164k • written 7.5 years ago by ▴ 140
1
vote
5
replies
3.2k
views
Most efficient way to trim overhanging bases after alignment
muscle fasta
updated 8.1 years ago by ▴ 100 • written 8.1 years ago by ▴ 140
1
vote
1
reply
1.8k
views
Create a phylogenetic tree with a bar at the end?
phylogeny tree
updated 8.1 years ago by 47k • written 8.1 years ago by ▴ 140
0
votes
1
reply
1.8k
views
Phylogenies: Is PAUP compatible with ETE 3?
phylogenies Paup trees
updated 8.1 years ago by ★ 3.8k • written 8.1 years ago by ▴ 140
1
vote
1
reply
2.1k
views
Edit Seq object with Biopython
python biopython
updated 19 months ago by 44k • written 8.1 years ago by ▴ 140
1
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2
replies
11k
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Comment: C: CIGAR and query sequence are of different length when trying to convert from sam
8.1 years ago by joreamayarom ▴ 140
6
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6
replies
11k
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CIGAR and query sequence are of different length when trying to convert from sam to bam?
samtools sam bam
8.1 years ago by joreamayarom ▴ 140
0
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1
reply
3.2k
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Comment: C: Most efficient way to trim overhanging bases after alignment
8.1 years ago by joreamayarom ▴ 140
11
votes
0
replies
102k
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Comment: C: Multiline Fasta To Single Line Fasta
8.1 years ago by joreamayarom ▴ 140
5
votes
1
reply
3.3k
views
What might explain the "[blastall] ERROR: Arguments must start with '-'" error in my code?
blast
updated 9.4 years ago by 35k • written 9.4 years ago by ▴ 140
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