Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
4.4k
views
Comment: Comment: filter BAM file for reads that map 100% identity
17 months ago by shinken123 ▴ 150
0
votes
2
replies
586
views
Add species name to a multiple alignment format (MAF) file
format names MAF species add name multiple alignment
written 21 months ago by ▴ 150
8
votes
4
replies
4.2k
views
GBS SNPs calling
GBS SAMTOOLS GATK FAST-GBS SNP calling
updated 2.1 years ago by ▴ 330 • written 7.2 years ago by ▴ 150
1
vote
1
reply
1.2k
views
vcftools 012 apparently is giving me wrong genotypes
vcftools 012
updated 2.4 years ago by ▴ 480 • written 2.4 years ago by ▴ 150
0
votes
0
replies
8.0k
views
Comment: Comment: 012 genotype matrix using vcf tools
2.4 years ago by shinken123 ▴ 150
0
votes
1
reply
893
views
Popgenome nvalid sites
vcf Popgenome
2.7 years ago by shinken123 ▴ 150
0
votes
0
replies
893
views
Answer: Answer: Popgenome nvalid sites
2.7 years ago by shinken123 ▴ 150
0
votes
0
replies
30k
views
Comment: Comment: Filtering Fasta Sequences By Chromosomes Names From A Big Fasta File
2.8 years ago by shinken123 ▴ 150
0
votes
0
replies
569
views
remove from mummerplot some contigs
mummerplot mummer
3.0 years ago by shinken123 ▴ 150
1
vote
0
replies
43k
views
Comment: C: How to filter vcf file on minimum genotype depth and quality for each sample
3.1 years ago by shinken123 ▴ 150
0
votes
1
reply
9.7k
views
Comment: C: how is obtained the BED score values (the 5th column of the bed files) in BED fi
3.3 years ago by shinken123 ▴ 150
0
votes
0
replies
7.9k
views
Comment: C: Fast LD computation from VCF files using tomahawk
3.7 years ago by shinken123 ▴ 150
0
votes
3
replies
2.1k
views
mapping quality for sanger reads
alignment
updated 18 months ago by 43k • written 8.7 years ago by ▴ 150
2
votes
4
replies
923
views
Call CNVs using gene positions
CNVs sequencing read depth
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 150
0
votes
1
reply
923
views
Comment: A: Call CNVs using gene positions
4.3 years ago by shinken123 ▴ 150
0
votes
1
reply
1.0k
views
Haplotype visualization from postion data
genome SNP sequence
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 150
0
votes
0
replies
769
views
Haploview Skipping block output: no valid blocks error
SNP software error
5.0 years ago by shinken123 ▴ 150
0
votes
0
replies
3.0k
views
Answer: A: Haploview error (Hapmap data format error)
5.0 years ago by shinken123 ▴ 150
0
votes
1
reply
3.0k
views
Comment: C: Haploview error (Hapmap data format error)
5.0 years ago by shinken123 ▴ 150
2
votes
1
reply
2.3k
views
Convert matrix in numeric format to genotype format
SNP
updated 5.4 years ago by 10k • written 5.4 years ago by ▴ 150
1
vote
0
replies
9.8k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
5.4 years ago by shinken123 ▴ 150
0
votes
1
reply
9.8k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
5.4 years ago by shinken123 ▴ 150
0
votes
1
reply
9.8k
views
Comment: C: calculate Per variant Heterozygosity from VCF file
5.4 years ago by shinken123 ▴ 150
15
votes
8
replies
10k
views
6 follow
Remove a list of positions form a VCF file
SNP vcf filter
updated 5.4 years ago by 11k • written 7.5 years ago by ▴ 150
0
votes
1
reply
5.3k
views
Hapmap to vcf
vcf hapmap
updated 9 months ago by 43k • written 5.6 years ago by ▴ 150
1
vote
2
replies
1.3k
views
obtain reference and base from read in a region from a bam file
alignment
updated 5.7 years ago by 20 • written 7.1 years ago by ▴ 150
1
vote
0
replies
2.0k
views
Calculation of heterozygosity
genome sequencing next-gen
5.8 years ago by shinken123 ▴ 150
0
votes
1
reply
1.2k
views
Perform of disco Snp with low coverage samples
discosnp low coverage SNP calling
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by ▴ 150
0
votes
0
replies
1.3k
views
Comment: C: trying to reproduce mirbase blastn
6.1 years ago by shinken123 ▴ 150
0
votes
2
replies
1.3k
views
trying to reproduce mirbase blastn
blastn mirbase
6.1 years ago by shinken123 ▴ 150
2
votes
11
replies
3.4k
views
vcf-merge is giving me a few SNPs in the merged vcf file
snp
updated 6.4 years ago by ▴ 150 • written 7.5 years ago by ▴ 150
1
vote
2
replies
1.2k
views
Ontology gramene releases
Assembly gene
6.5 years ago by shinken123 ▴ 150
0
votes
0
replies
2.4k
views
bcftools consensus trying to apply the alternative allele if my sample is homozygous or heterozygous alternative for the site
SNP sequence
6.6 years ago by shinken123 ▴ 150
5
votes
1
reply
20k
views
Answer: Answer: Obtaining the top matches from blast
updated 2.5 years ago by 43k • written 6.7 years ago by ▴ 150
1
vote
0
replies
4.2k
views
Comment: A: GBS SNPs calling
7.2 years ago by shinken123 ▴ 150
0
votes
0
replies
1.5k
views
Comment: C: Obtain contex sequence from a vcf file
7.4 years ago by shinken123 ▴ 150
2
votes
2
replies
1.5k
views
Obtain contex sequence from a vcf file
snp sequence
updated 7.4 years ago by 161k • written 7.4 years ago by ▴ 150
0
votes
0
replies
10k
views
Comment: C: remove a list of positions form a vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
0
replies
3.4k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
2
replies
3.4k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
1
reply
3.4k
views
Comment: C: vcf-merge is giving me a few SNPs in the merged vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
0
replies
2.4k
views
Comment: C: chain file for maize
7.5 years ago by shinken123 ▴ 150
3
votes
2
replies
2.4k
views
chain file for maize
snp genome
updated 7.5 years ago by ★ 1.9k • written 7.5 years ago by ▴ 150
0
votes
0
replies
3.3k
views
Comment: C: Get a table of minor an major allele from a vcf file
7.5 years ago by shinken123 ▴ 150
0
votes
0
replies
3.3k
views
Comment: C: Get a table of minor an major allele from a vcf file
7.5 years ago by shinken123 ▴ 150
2
votes
6
replies
3.3k
views
Get a table of minor an major allele from a vcf file
SNP sequence genome
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by ▴ 150
0
votes
0
replies
3.3k
views
Comment: C: Get a table of minor an major allele from a vcf file
7.6 years ago by shinken123 ▴ 150
0
votes
0
replies
2.6k
views
Comment: C: Bwa mem is giving me alignements that are causing noise in subsequent analysis.
7.9 years ago by shinken123 ▴ 150
58 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6