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0
votes
2
replies
593
views
Add species name to a multiple alignment format (MAF) file
format names MAF species add name multiple alignment
written 21 months ago by ▴ 150
8
votes
4
replies
4.2k
views
GBS SNPs calling
GBS SAMTOOLS GATK FAST-GBS SNP calling
updated 2.2 years ago by ▴ 330 • written 7.2 years ago by ▴ 150
1
vote
1
reply
1.2k
views
vcftools 012 apparently is giving me wrong genotypes
vcftools 012
updated 2.4 years ago by ▴ 480 • written 2.4 years ago by ▴ 150
0
votes
1
reply
904
views
Popgenome nvalid sites
vcf Popgenome
2.7 years ago by shinken123 ▴ 150
0
votes
0
replies
575
views
remove from mummerplot some contigs
mummerplot mummer
3.0 years ago by shinken123 ▴ 150
0
votes
3
replies
2.1k
views
mapping quality for sanger reads
alignment
updated 19 months ago by 43k • written 8.7 years ago by ▴ 150
2
votes
4
replies
936
views
Call CNVs using gene positions
CNVs sequencing read depth
updated 4.2 years ago by 20 • written 4.3 years ago by ▴ 150
0
votes
1
reply
1.0k
views
Haplotype visualization from postion data
genome SNP sequence
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 150
0
votes
0
replies
780
views
Haploview Skipping block output: no valid blocks error
SNP software error
5.0 years ago by shinken123 ▴ 150
2
votes
1
reply
2.3k
views
Convert matrix in numeric format to genotype format
SNP
updated 5.4 years ago by 10k • written 5.4 years ago by ▴ 150
15
votes
8
replies
10k
views
6 follow
Remove a list of positions form a VCF file
SNP vcf filter
updated 5.4 years ago by 11k • written 7.5 years ago by ▴ 150
0
votes
1
reply
5.4k
views
Hapmap to vcf
vcf hapmap
updated 9 months ago by 43k • written 5.6 years ago by ▴ 150
1
vote
2
replies
1.3k
views
obtain reference and base from read in a region from a bam file
alignment
updated 5.7 years ago by 20 • written 7.1 years ago by ▴ 150
1
vote
0
replies
2.0k
views
Calculation of heterozygosity
genome sequencing next-gen
5.8 years ago by shinken123 ▴ 150
0
votes
1
reply
1.2k
views
Perform of disco Snp with low coverage samples
discosnp low coverage SNP calling
updated 5.9 years ago by ▴ 900 • written 5.9 years ago by ▴ 150
0
votes
2
replies
1.4k
views
trying to reproduce mirbase blastn
blastn mirbase
6.1 years ago by shinken123 ▴ 150
2
votes
11
replies
3.5k
views
vcf-merge is giving me a few SNPs in the merged vcf file
snp
updated 6.4 years ago by ▴ 150 • written 7.6 years ago by ▴ 150
1
vote
2
replies
1.2k
views
Ontology gramene releases
Assembly gene
6.5 years ago by shinken123 ▴ 150
0
votes
0
replies
2.5k
views
bcftools consensus trying to apply the alternative allele if my sample is homozygous or heterozygous alternative for the site
SNP sequence
6.7 years ago by shinken123 ▴ 150
2
votes
2
replies
1.5k
views
Obtain contex sequence from a vcf file
snp sequence
updated 7.4 years ago by 161k • written 7.4 years ago by ▴ 150
3
votes
2
replies
2.5k
views
chain file for maize
snp genome
updated 7.6 years ago by ★ 1.9k • written 7.6 years ago by ▴ 150
2
votes
6
replies
3.3k
views
Get a table of minor an major allele from a vcf file
SNP sequence genome
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by ▴ 150
0
votes
9
replies
2.7k
views
Bwa mem is giving me alignements that are causing noise in subsequent analysis. How I can filter them?
genome next-gen alignment
updated 8.0 years ago by 7.3k • written 8.0 years ago by ▴ 150
1
vote
3
replies
1.7k
views
how to remove sequences form a QUAL file using a list of IDs
sequencing
updated 18 months ago by 43k • written 8.8 years ago by ▴ 150
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