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2
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3
replies
2.1k
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Any tools to estimate the relative abundance of immune cell in tumor
RNA-Seq immune fraction absolute estimate
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 750
0
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0
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2.1k
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Comment: C: Any tools to estimate the relative abundance of immune cell in tumor
7.1 years ago by CY ▴ 750
1
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0
replies
1.1k
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Can any tool distinguishs immune inflammation / immune excluded phenotype?
RNA-Seq TCR-Seq ESTIMATE
7.1 years ago by CY ▴ 750
3
votes
1
reply
3.5k
views
Driver mutation vs biomarker vs recurrent mutation
Driver mutation biomarker mutation VAF
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 750
0
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1
reply
1.4k
views
Why not simple Gaussian model instead of Gaussian mixture for VQSR?
VQSR GATK
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 750
0
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1
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14k
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Comment: C: Interesting bioinformatics blogs (2017 edition)
7.3 years ago by CY ▴ 750
0
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0
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6.3k
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Comment: C: Your Favorite Bioinformatics Blogs (October 2011)
7.3 years ago by CY ▴ 750
1
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0
replies
28k
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Answer: A: Your Favorite Bioinformatics Blogs (March 2010)
7.3 years ago by CY ▴ 750
0
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0
replies
11k
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Answer: A: Your Favorite Bioinformatics Blog(S) (2013 Edition)
7.3 years ago by CY ▴ 750
0
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0
replies
1.8k
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Comment: C: Why VarScan always get more somatic variants than other caller
7.4 years ago by CY ▴ 750
0
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1
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1.8k
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Comment: C: Why VarScan always get more somatic variants than other caller
7.4 years ago by CY ▴ 750
0
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1
reply
1.8k
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Comment: C: Why VarScan always get more somatic variants than other caller
7.4 years ago by CY ▴ 750
0
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6
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1.8k
views
Why VarScan always get more somatic variants than other caller
Variant VarScan
7.4 years ago by CY ▴ 750
0
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1
reply
5.0k
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Comment: C: Immunotherapy tools for predicting binding affinity between TCR and epitode
7.4 years ago by CY ▴ 750
1
vote
1
reply
1.5k
views
R plot.DNAcopy with x-axis showing chromosome instead of chromosome coordinate
RNA-Seq CNV DNAcopy
7.4 years ago by CY ▴ 750
0
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1
reply
2.6k
views
Comment: C: SciClone: Why cluster in non-CN neutral region considering it infers only on CN
7.4 years ago by CY ▴ 750
2
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4
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2.6k
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SciClone: Why cluster in non-CN neutral region considering it infers only on CN neutral region
SciClone clonality
7.4 years ago by CY ▴ 750
0
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0
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2.8k
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Comment: C: SciClone: Which Variant to Which Clone
7.4 years ago by CY ▴ 750
0
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0
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5.0k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
7.4 years ago by CY ▴ 750
4
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7
replies
5.0k
views
STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
RNA-Seq STAR RSEM HT-Seq gene expression
7.4 years ago by CY ▴ 750
1
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1
reply
5.0k
views
Answer: A: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
7.4 years ago by CY ▴ 750
0
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1
reply
5.0k
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Comment: C: STAR-HT-Seq/featureCount got much more gene expression count than RSEM did
7.4 years ago by CY ▴ 750
0
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1
reply
4.1k
views
Comment: C: SciClone not numeric error
7.4 years ago by CY ▴ 750
0
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1
reply
21k
views
Comment: C: why PCA for RNA-Seq but tSNE for scRNA-seq?
7.5 years ago by CY ▴ 750
0
votes
0
replies
1.4k
views
Log-odds based filtering and pairHMM alignment during local realignment
GATK mutect Bayes
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 750
0
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0
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2.5k
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Comment: C: Inconsistency of allele depth in BAM and VCF
7.5 years ago by CY ▴ 750
3
votes
3
replies
2.5k
views
Inconsistency of allele depth in BAM and VCF
allele depth bam vcf variant
updated 7.5 years ago by ▴ 620 • written 7.5 years ago by ▴ 750
1
vote
1
reply
2.2k
views
CBS in CNV calling
cnv cbs
updated 7.5 years ago by 89k • written 7.5 years ago by ▴ 750
0
votes
0
replies
1.1k
views
RNA-Seq: Expression consistency across time point
RNA-Seq expression
7.6 years ago by CY ▴ 750
0
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0
replies
7.3k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
7.6 years ago by CY ▴ 750
0
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1
reply
7.3k
views
Comment: C: Lack of consensus between NGS & Sanger sequencing on indels/mutations
7.6 years ago by CY ▴ 750
2
votes
3
replies
1.3k
views
Prior probability during SNP calling
SNP
7.6 years ago by CY ▴ 750
0
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1
reply
2.8k
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Comment: C: call somatic CNV from cfDNA with normal control
7.6 years ago by CY ▴ 750
0
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1
reply
2.3k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
7.6 years ago by CY ▴ 750
0
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1
reply
2.3k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
7.6 years ago by CY ▴ 750
0
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1
reply
2.3k
views
Comment: C: During GO / pathway enrichment analysis, should we exclude genes not expressed i
7.6 years ago by CY ▴ 750
4
votes
2
replies
2.9k
views
How 2-channel sequencing chemistry (Next-Seq) distinguish "G" and 'no signal'
Next-Seq QC
updated 7.6 years ago by 105k • written 7.6 years ago by ▴ 750
2
votes
7
replies
2.3k
views
During GO / pathway enrichment analysis, should we exclude genes not expressed in both groups?
RNA-Seq enrichment analysis DE analysis
7.6 years ago by CY ▴ 750
0
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1
reply
1.7k
views
Comment: C: one sample from pool shows low quality at the end, why?
7.6 years ago by CY ▴ 750
0
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0
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1.7k
views
Comment: C: one sample from pool shows low quality at the end, why?
7.6 years ago by CY ▴ 750
0
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0
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1.7k
views
Comment: C: one sample from pool shows low quality at the end, why?
7.6 years ago by CY ▴ 750
1
vote
6
replies
1.7k
views
one sample from pool shows low quality at the end, why?
fastqc
7.6 years ago by CY ▴ 750
0
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1
reply
2.8k
views
Comment: C: call somatic CNV from cfDNA with normal control
7.6 years ago by CY ▴ 750
2
votes
6
replies
2.8k
views
call somatic CNV from cfDNA with normal control
cnv somatic cfDNA
7.6 years ago by CY ▴ 750
0
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1
reply
3.1k
views
Comment: C: WGS coverage (depth) for CNV detection
7.7 years ago by CY ▴ 750
2
votes
4
replies
3.1k
views
WGS coverage (depth) for CNV detection
WGS CNV
updated 7.7 years ago by ★ 2.9k • written 7.7 years ago by ▴ 750
0
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0
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2.4k
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Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
7.7 years ago by CY ▴ 750
0
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1
reply
2.4k
views
Comment: C: How representative the solid tumor sample is to that entire tumor lesion in term
7.7 years ago by CY ▴ 750
0
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6
replies
2.4k
views
How representative the solid tumor sample is to that entire tumor lesion in terms of somatic mutation profile
tumor somatic mutation
7.7 years ago by CY ▴ 750
0
votes
0
replies
4.5k
views
Answer: A: Can I ignore somatic mutations that are also in dbSNP when analyzing cancer-rela
7.7 years ago by CY ▴ 750
278 results • Page 4 of 6
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