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2
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2
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1.8k
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Annotation for miRNA-seq data analysis
mirna hisat ensembl RNA-Seq Assembly
updated 5.4 years ago by ▴ 330 • written 5.4 years ago by ▴ 550
0
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0
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1.8k
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Comment: C: Tips for miRNA-Seq analysis
5.4 years ago by Arindam Ghosh ▴ 550
1
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1
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24k
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Comment: C: WGCNA modules and categorical traits relationship
5.4 years ago by Arindam Ghosh ▴ 550
0
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1
reply
54k
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Comment: A: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
5.4 years ago by Arindam Ghosh ▴ 550
0
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1
reply
24k
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Comment: C: WGCNA modules and categorical traits relationship
5.4 years ago by Arindam Ghosh ▴ 550
0
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1
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24k
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Comment: C: WGCNA modules and categorical traits relationship
5.4 years ago by Arindam Ghosh ▴ 550
0
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1
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2.1k
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Comment: C: Correlating WGCNA modules to Diseased/Not-Diseased Trait
5.4 years ago by Arindam Ghosh ▴ 550
0
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1
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5.3k
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Comment: C: How to analyze differentially expressed lncRNA from total RNA
5.6 years ago by Arindam Ghosh ▴ 550
0
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0
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5.1k
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Comment: C: Can ncRNAs be found from all RNA-seq data?
5.6 years ago by Arindam Ghosh ▴ 550
1
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0
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81k
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Comment: C: Extract fasta sequences from a file using a list in another file.
5.6 years ago by Arindam Ghosh ▴ 550
1
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2
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1.2k
views
How to identify ZNFs from a gene list?
protein domain pfam uniprot
updated 5.6 years ago by 166k • written 5.6 years ago by ▴ 550
0
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1
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12k
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Comment: C: WGCNA export Network To Cytoscape without trait data, error "Cannot determine no
5.7 years ago by Arindam Ghosh ▴ 550
0
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0
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4.6k
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Comment: C: WGCNA and VisAnt
5.7 years ago by Arindam Ghosh ▴ 550
0
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1
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9.4k
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Comment: C: A good pipeline for GO term analysis on RNA-seq Clusters in R?
5.7 years ago by Arindam Ghosh ▴ 550
0
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0
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3.8k
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Comment: C: Question about gene ontology data visualization
5.7 years ago by Arindam Ghosh ▴ 550
0
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1
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9.4k
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Comment: C: A good pipeline for GO term analysis on RNA-seq Clusters in R?
5.7 years ago by Arindam Ghosh ▴ 550
0
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0
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8.4k
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Comment: C: genlist for clusterprofiler
5.7 years ago by Arindam Ghosh ▴ 550
1
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1
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1.7k
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Compact visualisation of enrichment analysis
RNA-Seq gene ontology PANTHER DAVID REVIGO
updated 5.7 years ago by ★ 2.6k • written 5.7 years ago by ▴ 550
0
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0
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13k
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Comment: C: What is the meaning of "weight" in the WGCNA Cytoscape edge output file?
5.8 years ago by Arindam Ghosh ▴ 550
0
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0
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819
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Signed hybrid network vs up/down -reg network
WGCNA network
5.8 years ago by Arindam Ghosh ▴ 550
0
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0
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3.3k
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Comment: C: up regulated and down regulated genes in co expression network
5.8 years ago by Arindam Ghosh ▴ 550
0
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0
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3.0k
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Comment: C: Gene Ontology visualisation webservice in 2017
5.9 years ago by Arindam Ghosh ▴ 550
0
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1
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4.5k
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Comment: C: What is the need for signed or signed hybrid (as in WGCNA) co-expression network
5.9 years ago by Arindam Ghosh ▴ 550
2
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3
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4.5k
views
What is the need for signed or signed hybrid (as in WGCNA) co-expression networks?
wgcna network
updated 5.9 years ago by 3.9k • written 5.9 years ago by ▴ 550
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0
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12k
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Comment: C: WGCNA- Large number of genes clustering under one Module
5.9 years ago by Arindam Ghosh ▴ 550
0
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1
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16k
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Comment: C: How to find the hub genes in the gene co-expression network constructed by WGCNA
5.9 years ago by Arindam Ghosh ▴ 550
0
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0
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7.7k
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Comment: C: How can I increase the sensitivity of WGCNA modules?
5.9 years ago by Arindam Ghosh ▴ 550
0
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0
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5.8k
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Comment: C: Why does biomart return multiple Entrez IDs
6.0 years ago by Arindam Ghosh ▴ 550
0
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1
reply
4.3k
views
Comment: C: Why is the number of genes in certain a module in WGCNA super high?
6.0 years ago by Arindam Ghosh ▴ 550
0
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2
replies
8.2k
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Comment: C: Consensus WGCNA: soft-threshold power selection
6.0 years ago by Arindam Ghosh ▴ 550
0
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1
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4.3k
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Comment: C: Why is the number of genes in certain a module in WGCNA super high?
6.0 years ago by Arindam Ghosh ▴ 550
0
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0
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4.4k
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Comment: C: WGCNA network with condition and normal samples
6.0 years ago by Arindam Ghosh ▴ 550
0
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1
reply
4.3k
views
Comment: C: Why is the number of genes in certain a module in WGCNA super high?
6.0 years ago by Arindam Ghosh ▴ 550
0
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0
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2.1k
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Comment: C: Gene Coexpression Network Construction
6.0 years ago by Arindam Ghosh ▴ 550
0
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0
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4.0k
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Comment: C: HISAT2 Error Building Index
6.0 years ago by Arindam Ghosh ▴ 550
2
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1
reply
2.1k
views
Threshold in WGCNA
RNA-Seq wgcna
6.0 years ago by Arindam Ghosh ▴ 550
1
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0
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4.4k
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Answer: A: How to construct co-expression network with correlation matrix?
6.0 years ago by Arindam Ghosh ▴ 550
0
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1
reply
4.5k
views
Answer: A: Correlation matrix from deseq2 results
6.0 years ago by Arindam Ghosh ▴ 550
0
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0
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3.3k
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Comment: C: Low pseudo-alignment rate with Kallisto
6.0 years ago by Arindam Ghosh ▴ 550
7
votes
2
replies
11k
views
What is a good Trimmomatic parameter?
trimmomatic RNA-Seq ngs sequencing
updated 6.1 years ago by ▴ 10 • written 7.5 years ago by ▴ 550
0
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0
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7.1k
views
Comment: C: normalization RNA-seq data between different types of libraries
6.2 years ago by Arindam Ghosh ▴ 550
0
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1
reply
5.0k
views
Answer: A: interval_list for hg38
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
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12k
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Comment: C: Post alignment QC of RNA-seq data
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
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22k
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Comment: C: How to interpret Per sequence GC content module in FastQC for RNA-seq data?
6.2 years ago by Arindam Ghosh ▴ 550
13
votes
13
replies
22k
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How to interpret Per sequence GC content module in FastQC for RNA-seq data?
RNA-Seq FastQC QC GC-content
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
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14k
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Comment: C: Bimodal GC content
6.2 years ago by Arindam Ghosh ▴ 550
0
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1
reply
12k
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Comment: C: Post alignment QC of RNA-seq data
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
replies
14k
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Comment: C: 3' Bias in RNASEQ data
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
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5.4k
views
Comment: C: featureCounts for aligned reads
6.2 years ago by Arindam Ghosh ▴ 550
0
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0
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2.7k
views
Comment: C: FetureCounts low assigned rate and its weird total number counts?
6.2 years ago by Arindam Ghosh ▴ 550
223 results • Page 2 of 5
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