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comments
4
votes
2
replies
611
views
paired test for differential expression on RNAseq data
differential-Gene-Expression
edgeR
RNA-seq
deseq2
R
updated 13 months ago by
Ram
43k • written 13 months ago by
minoo
▴ 10
3
votes
3
replies
648
views
How to do differential expression without having replicates
deseq2
RNA-Seq
edgeR
updated 14 months ago by
Ram
43k • written 14 months ago by
minoo
▴ 10
0
votes
0
replies
570
views
Comment:
Comment: how to seperate VEP INFO column into seperate columns
14 months ago by
minoo
▴ 10
0
votes
2
replies
570
views
how to seperate VEP INFO column into seperate columns
vcf
bcftools
vep
updated 10 months ago by
Ram
43k • written 14 months ago by
minoo
▴ 10
5
votes
5
replies
2.4k
views
bcftools isec output for multiple vcf files interpretations
bcftools
mutect2
variant-calling
gatk
updated 10 months ago by
Ram
43k • written 14 months ago by
minoo
▴ 10
0
votes
0
replies
2.4k
views
Comment:
Comment: bcftools isec output for multiple vcf files interpretations
14 months ago by
minoo
▴ 10
0
votes
0
replies
530
views
Comment:
Comment: Filetering low reads from vcf file/ download exonic region, coding regions of G
14 months ago by
minoo
▴ 10
0
votes
2
replies
530
views
Filetering low reads from vcf file/ download exonic region, coding regions of GRCh38 - hg38
picard
gatk
vcftools
mutect2
14 months ago by
minoo
▴ 10
0
votes
0
replies
841
views
Extract different variants of a vcf file comparing to other vcf files
bedtools
mutect2
vcftools
gatk
updated 10 months ago by
Ram
43k • written 14 months ago by
minoo
▴ 10
0
votes
1
reply
767
views
Comment:
Comment: VAriant calling in RNASeq
17 months ago by
minoo
▴ 10
0
votes
3
replies
767
views
VAriant calling in RNASeq
rnaseq
snp
indel
short
variant
updated 17 months ago by
iraun
6.2k • written 17 months ago by
minoo
▴ 10
0
votes
1
reply
1.0k
views
Comment:
Comment: PlotHeatmap in deeptools horizontally
21 months ago by
minoo
▴ 10
0
votes
1
reply
1.0k
views
Comment:
Comment: PlotHeatmap in deeptools horizontally
21 months ago by
minoo
▴ 10
2
votes
5
replies
1.0k
views
PlotHeatmap in deeptools horizontally
plotHeatmap
cutrun
chip-seq
deeptools
updated 10 months ago by
Ram
43k • written 21 months ago by
minoo
▴ 10
0
votes
1
reply
775
views
peak calling in CUT&RUN(Chipseq) Analysis
cutandrun
chipseq
SEACR
cutandtag
deeptools
updated 21 months ago by
jv
★ 1.8k • written 21 months ago by
minoo
▴ 10
2
votes
1
reply
447
views
Duplicate chromosome location columns in a bed file makes problem in importing them into R
granges
bedtools
r
samtools
bowtie2
updated 21 months ago by
cmdcolin
★ 3.8k • written 21 months ago by
minoo
▴ 10
0
votes
2
replies
996
views
Comment:
Comment: Extract counts from paired end bam files
24 months ago by
minoo
▴ 10
0
votes
2
replies
996
views
Comment:
Comment: Extract counts from paired end bam files
24 months ago by
minoo
▴ 10
3
votes
7
replies
996
views
Extract counts from paired end bam files
featureCounts
fastqc
STAR
samtools
updated 24 months ago by
swbarnes2
14k • written 24 months ago by
minoo
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: add gene names to 'isec' output files of bcftools'
2.3 years ago by
minoo
▴ 10
0
votes
1
reply
7.9k
views
Comment:
Comment: cram file to fastq conversion
2.3 years ago by
minoo
▴ 10
3
votes
2
replies
713
views
how to show highly expressed genes between samples with the same condition
r
rnaseq
expression.
gene
updated 2.3 years ago by
cpad0112
21k • written 2.3 years ago by
minoo
▴ 10
0
votes
2
replies
1.4k
views
Comment:
Comment: add gene names to 'isec' output files of bcftools'
2.4 years ago by
minoo
▴ 10
0
votes
5
replies
1.4k
views
add gene names to 'isec' output files of bcftools'
bcftools
vcftools
gene-symbol
updated 10 months ago by
Ram
43k • written 2.4 years ago by
minoo
▴ 10
0
votes
0
replies
527
views
Identify cell type from bulk RNA sequencing data
sequencing
type
clustering
r
3.1 years ago by
minoo
▴ 10
1
vote
3
replies
5.9k
views
miRNA_ID to GENE_SYMBOL conversion
RNA-Seq
genome
gene
updated 7.2 years ago by
Denise CS
★ 5.2k • written 8.0 years ago by
minoo
▴ 10
0
votes
0
replies
3.6k
views
miRNA ID or miRBase accession to Gene Symbol or Entrez Gene ID
r
RNA-Seq
gene
8.0 years ago by
minoo
▴ 10
0
votes
0
replies
5.9k
views
Comment:
C: miRNA_ID to GENE_SYMBOL conversion
8.0 years ago by
minoo
▴ 10
0
votes
4
replies
4.7k
views
Convert GenBank Nocleotide Accession to Gene Symbols
RNA-Seq
gene
updated 21 months ago by
Ram
43k • written 8.3 years ago by
minoo
▴ 10
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