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4
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2
replies
1.0k
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paired test for differential expression on RNAseq data
differential-Gene-Expression edgeR RNA-seq deseq2 R
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 10
3
votes
3
replies
1.3k
views
How to do differential expression without having replicates
deseq2 RNA-Seq edgeR
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 10
0
votes
0
replies
973
views
Comment: Comment: how to seperate VEP INFO column into seperate columns
2.7 years ago by minoo ▴ 10
0
votes
2
replies
973
views
how to seperate VEP INFO column into seperate columns
vcf bcftools vep
updated 2.3 years ago by 45k • written 2.7 years ago by ▴ 10
5
votes
5
replies
5.0k
views
bcftools isec output for multiple vcf files interpretations
bcftools mutect2 variant-calling gatk
updated 2.3 years ago by 45k • written 2.7 years ago by ▴ 10
0
votes
0
replies
5.0k
views
Comment: Comment: bcftools isec output for multiple vcf files interpretations
2.7 years ago by minoo ▴ 10
0
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0
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1.0k
views
Comment: Comment: Filetering low reads from vcf file/ download exonic region, coding regions of G
2.7 years ago by minoo ▴ 10
0
votes
2
replies
1.0k
views
Filetering low reads from vcf file/ download exonic region, coding regions of GRCh38 - hg38
picard gatk vcftools mutect2
2.7 years ago by minoo ▴ 10
0
votes
0
replies
1.4k
views
Extract different variants of a vcf file comparing to other vcf files
bedtools mutect2 vcftools gatk
updated 2.3 years ago by 45k • written 2.7 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Comment: Comment: VAriant calling in RNASeq
2.9 years ago by minoo ▴ 10
0
votes
3
replies
1.3k
views
VAriant calling in RNASeq
rnaseq snp indel short variant
updated 2.9 years ago by 6.2k • written 2.9 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: PlotHeatmap in deeptools horizontally
3.2 years ago by minoo ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: PlotHeatmap in deeptools horizontally
3.2 years ago by minoo ▴ 10
2
votes
5
replies
1.8k
views
PlotHeatmap in deeptools horizontally
plotHeatmap cutrun chip-seq deeptools
updated 2.3 years ago by 45k • written 3.2 years ago by ▴ 10
0
votes
1
reply
1.4k
views
peak calling in CUT&RUN(Chipseq) Analysis
cutandrun chipseq SEACR cutandtag deeptools
updated 3.3 years ago by ★ 1.9k • written 3.3 years ago by ▴ 10
2
votes
1
reply
821
views
Duplicate chromosome location columns in a bed file makes problem in importing them into R
granges bedtools r samtools bowtie2
updated 3.3 years ago by ★ 4.3k • written 3.3 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Comment: Comment: Extract counts from paired end bam files
3.5 years ago by minoo ▴ 10
0
votes
2
replies
1.8k
views
Comment: Comment: Extract counts from paired end bam files
3.5 years ago by minoo ▴ 10
3
votes
7
replies
1.8k
views
Extract counts from paired end bam files
featureCounts fastqc STAR samtools
updated 3.4 years ago by 15k • written 3.5 years ago by ▴ 10
0
votes
0
replies
2.0k
views
Comment: Comment: add gene names to 'isec' output files of bcftools'
3.7 years ago by minoo ▴ 10
0
votes
1
reply
12k
views
Comment: Comment: cram file to fastq conversion
3.7 years ago by minoo ▴ 10
3
votes
2
replies
1.1k
views
how to show highly expressed genes between samples with the same condition
r rnaseq expression. gene
updated 3.7 years ago by 21k • written 3.8 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Comment: Comment: add gene names to 'isec' output files of bcftools'
3.9 years ago by minoo ▴ 10
0
votes
5
replies
2.0k
views
add gene names to 'isec' output files of bcftools'
bcftools vcftools gene-symbol
updated 2.3 years ago by 45k • written 3.9 years ago by ▴ 10
0
votes
0
replies
691
views
Identify cell type from bulk RNA sequencing data
sequencing type clustering r
4.6 years ago by minoo ▴ 10
1
vote
3
replies
6.8k
views
miRNA_ID to GENE_SYMBOL conversion
RNA-Seq genome gene
updated 8.7 years ago by ★ 5.2k • written 9.5 years ago by ▴ 10
0
votes
0
replies
3.9k
views
miRNA ID or miRBase accession to Gene Symbol or Entrez Gene ID
r RNA-Seq gene
9.5 years ago by minoo ▴ 10
0
votes
0
replies
6.8k
views
Comment: C: miRNA_ID to GENE_SYMBOL conversion
9.5 years ago by minoo ▴ 10
0
votes
4
replies
5.4k
views
Convert GenBank Nocleotide Accession to Gene Symbols
RNA-Seq gene
updated 3.2 years ago by 45k • written 9.8 years ago by ▴ 10
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