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questions
3
votes
3
replies
306
views
genome assembly records not present in assembly_summary.txt
ncbi
bacteria
assembly
updated 7 days ago by
GenoMax
142k • written 7 days ago by
sapuizait
▴ 10
2
votes
2
replies
411
views
many taxa and many seqs phylogeny
raxML
fasttree
phylogeny
3 months ago by
sapuizait
▴ 10
5
votes
1
reply
436
views
samtools extract the non-specified region
samtools
updated 4 months ago by
Ram
43k • written 4 months ago by
sapuizait
▴ 10
1
vote
9
replies
1.1k
views
more reads in metagenomic samples after 'removing host reads'
bowtie2
samtools
updated 7 months ago by
GenoMax
142k • written 7 months ago by
sapuizait
▴ 10
1
vote
3
replies
739
views
database for better classification of illumina contigs
classification
illumina
contigs
NR
updated 14 months ago by
shelkmike
★ 1.2k • written 15 months ago by
sapuizait
▴ 10
2
votes
3
replies
933
views
why merge assemblies?
assembly
merge
illumuna
data
2.4 years ago by
sapuizait
▴ 10
2
votes
4
replies
2.0k
views
kegg IDs to pathways in R
R
KEGG
list
pathways
2.5 years ago by
sapuizait
▴ 10
1
vote
4
replies
1.1k
views
convert detailed alignment format to fasta
alignment
updated 9 months ago by
Ram
43k • written 2.8 years ago by
sapuizait
▴ 10
0
votes
1
reply
538
views
inexpensive method to detect SNPs in entire bacterial genomes
bacteria
SNPs
RFLP
genome
updated 2.8 years ago by
Mensur Dlakic
★ 27k • written 2.8 years ago by
sapuizait
▴ 10
0
votes
0
replies
473
views
need advice for comparing fragment counts of genes across multiple WGS metagenomes
WGS
normalization
KMA
3.1 years ago by
sapuizait
▴ 10
4
votes
6
replies
1.6k
views
cannot download refseq genomes
refseq
updated 13 months ago by
Ram
43k • written 3.2 years ago by
sapuizait
▴ 10
3
votes
7
replies
1.3k
views
Has anyone heard the term data warehousing in genomics before?
data
warehouse
updated 3.2 years ago by
ahatest007
• 0 • written 5.5 years ago by
sapuizait
▴ 10
0
votes
0
replies
663
views
recover IMG ids from JGI site
JGI
IMG
ids
updated 3.2 years ago by
lieven.sterck
15k • written 3.2 years ago by
sapuizait
▴ 10
0
votes
0
replies
657
views
diamond (blast) exit codes
diamond
exit codes
4.1 years ago by
sapuizait
▴ 10
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