Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
7
votes
8
replies
11k
views
6 follow
HIV : gtf or gff annotation
gtf annotation hiv gff
updated 15 days ago by ▴ 140 • written 11.2 years ago by 11k
1
vote
1
reply
1.9k
views
Answer: Answer: LD SNP pruning with plink
14 months ago by Nicolas Rosewick 11k
1
vote
1
reply
2.0k
views
Answer: Answer: Calling variants/SNP for single-cell RNA-seq data
15 months ago by Nicolas Rosewick 11k
3
votes
8
replies
8.2k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 16 months ago by • 0 • written 6.5 years ago by 11k
0
votes
0
replies
623
views
Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
18 months ago by Nicolas Rosewick 11k
2
votes
1
reply
1.2k
views
Comment: Comment: How do I add sample annotations to this data?
23 months ago by Nicolas Rosewick 11k
0
votes
0
replies
978
views
Comment: Comment: DESEQ2 analysis result
23 months ago by Nicolas Rosewick 11k
0
votes
0
replies
974
views
Comment: Comment: how to create a loop in R
24 months ago by Nicolas Rosewick 11k
1
vote
0
replies
3.2k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
2.0 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.4k
views
Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
2.1 years ago by Nicolas Rosewick 11k
0
votes
2
replies
3.1k
views
Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
2.2 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.9k
views
Answer: Answer: FindAllMarkers in Seurat and statistical problem
2.2 years ago by Nicolas Rosewick 11k
0
votes
0
replies
3.9k
views
Comment: Comment: Advantages of install.packages() versus BiocManager::install()
2.3 years ago by Nicolas Rosewick 11k
6
votes
0
replies
1.1k
views
Answer: Answer: How to plot combined bar graph in R
2.3 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.6k
views
Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
2.4 years ago by Nicolas Rosewick 11k
2
votes
0
replies
1.4k
views
Comment: Comment: Tophat: Genome indexing error
2.4 years ago by Nicolas Rosewick 11k
1
vote
0
replies
2.0k
views
Answer: Answer: TCGAbiolinks
2.4 years ago by Nicolas Rosewick 11k
0
votes
0
replies
4.9k
views
Comment: Comment: Identifying long stretches of Ns
2.4 years ago by Nicolas Rosewick 11k
17
votes
14
replies
32k
views
13 follow
Merge Paired-End Reads
fastq
updated 2.5 years ago by 45k • written 13.9 years ago by 11k
0
votes
1
reply
1.3k
views
Comment: Comment: Plink-association test
2.5 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.7k
views
Comment: Comment: differential gene analysis
2.5 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.1k
views
Comment: Comment: Find genes which are related to SNPs
2.5 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.6k
views
Comment: Comment: Bedtools multicov outfile file error
2.6 years ago by Nicolas Rosewick 11k
0
votes
0
replies
1.3k
views
Comment: Comment: RNAseq matrix containing zero values
2.6 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.2k
views
Answer: Answer: How to do differential expression without having replicates
2.6 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Answer: Answer: GIAB and GRCh38
2.6 years ago by Nicolas Rosewick 11k
1
vote
2
replies
3.1k
views
Comment: Comment: Error in VQSR first step
2.6 years ago by Nicolas Rosewick 11k
1
vote
0
replies
2.2k
views
Comment: Comment: make BED file from existing BIM and FAM files
2.6 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.3k
views
Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
2.6 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.3k
views
Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
2.6 years ago by Nicolas Rosewick 11k
3
votes
1
reply
3.1k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
2.6 years ago by Nicolas Rosewick 11k
0
votes
1
reply
3.1k
views
Comment: Comment: IGV coverage bar has color, but no mutation?
2.6 years ago by Nicolas Rosewick 11k
1
vote
1
reply
3.9k
views
Comment: Comment: How to increase the speed of miRanda target prediction program?
2.7 years ago by Nicolas Rosewick 11k
0
votes
0
replies
1.2k
views
Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 2.8 years ago by 45k • written 2.8 years ago by 11k
2
votes
0
replies
2.1k
views
Comment: Comment: parallel for 10000 whole exome data
2.8 years ago by Nicolas Rosewick 11k
0
votes
0
replies
2.5k
views
Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
2.9 years ago by Nicolas Rosewick 11k
0
votes
1
reply
2.5k
views
Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
2.9 years ago by Nicolas Rosewick 11k
4
votes
0
replies
993
views
Answer: Answer: pvalue vs adjust p-value
2.9 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Comment: Comment: What is the best way to pre-process RNA-Seq data?
3.0 years ago by Nicolas Rosewick 11k
0
votes
1
reply
3.8k
views
Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
3.0 years ago by Nicolas Rosewick 11k
5
votes
4
replies
4.7k
views
hg19 interval list
gatk genome interval hg19
updated 3.3 years ago by 4.8k • written 6.4 years ago by 11k
0
votes
1
reply
1.0k
views
Comment: Comment: Mutations in contiguous sites within a sample
3.4 years ago by Nicolas Rosewick 11k
1
vote
1
reply
1.8k
views
Comment: Comment: Query hg37 rsid information
3.4 years ago by Nicolas Rosewick 11k
0
votes
1
reply
2.0k
views
Comment: Comment: sc/sn RNASeq
3.5 years ago by Nicolas Rosewick 11k
0
votes
1
reply
2.0k
views
Comment: Comment: sc/sn RNASeq
3.5 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.7k
views
Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
3.6 years ago by Nicolas Rosewick 11k
0
votes
0
replies
1.2k
views
Comment: Comment: Reads mapping
3.6 years ago by Nicolas Rosewick 11k
1
vote
0
replies
793
views
GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
3.6 years ago by Nicolas Rosewick 11k
2
votes
1
reply
3.0k
views
Comment: Comment: Inflated p-values in QQ-plot
3.6 years ago by Nicolas Rosewick 11k
0
votes
6
replies
3.2k
views
plink : Batch effect issues after merge of two datasets
plink merge
updated 3.7 years ago by • 0 • written 4.5 years ago by 11k
1,080 results • Page 1 of 22
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6