Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
129
views
Annotation transfer between QuPath (H&E) and 10X spatial transcriptomics Visium
alignment seurat spaceranger visium
7 weeks ago by Nicolas Rosewick 11k
2
votes
1
reply
462
views
Comment: Comment: How do I add sample annotations to this data?
6 months ago by Nicolas Rosewick 11k
0
votes
0
replies
470
views
Comment: Comment: DESEQ2 analysis result
6 months ago by Nicolas Rosewick 11k
0
votes
0
replies
431
views
Comment: Comment: how to create a loop in R
7 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.3k
views
Answer: Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
7 months ago by Nicolas Rosewick 11k
0
votes
1
reply
665
views
Comment: Comment: How to understand if a GWAS sample comes from Chromosome X or Y
8 months ago by Nicolas Rosewick 11k
0
votes
2
replies
1.3k
views
Comment: Comment: How to allocate memory and CPU without SLURM in a linux cluster?
9 months ago by Nicolas Rosewick 11k
0
votes
1
reply
779
views
Answer: Answer: FindAllMarkers in Seurat and statistical problem
9 months ago by Nicolas Rosewick 11k
0
votes
0
replies
1.8k
views
Comment: Comment: Advantages of install.packages() versus BiocManager::install()
10 months ago by Nicolas Rosewick 11k
6
votes
0
replies
553
views
Answer: Answer: How to plot combined bar graph in R
11 months ago by Nicolas Rosewick 11k
0
votes
1
reply
782
views
Comment: Comment: How can we separate downregulated genes and upregulated genes from list of dataf
12 months ago by Nicolas Rosewick 11k
2
votes
0
replies
662
views
Comment: Comment: Tophat: Genome indexing error
12 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.1k
views
Answer: Answer: TCGAbiolinks
12 months ago by Nicolas Rosewick 11k
0
votes
0
replies
3.9k
views
Comment: Comment: Identifying long stretches of Ns
12 months ago by Nicolas Rosewick 11k
17
votes
14
replies
30k
views
13 follow
Merge Paired-End Reads
fastq
updated 12 months ago by 43k • written 12.5 years ago by 11k
0
votes
1
reply
629
views
Comment: Comment: Plink-association test
13 months ago by Nicolas Rosewick 11k
2
votes
1
reply
820
views
Comment: Comment: differential gene analysis
13 months ago by Nicolas Rosewick 11k
1
vote
1
reply
535
views
Comment: Comment: Find genes which are related to SNPs
13 months ago by Nicolas Rosewick 11k
0
votes
1
reply
831
views
Comment: Comment: Bedtools multicov outfile file error
14 months ago by Nicolas Rosewick 11k
0
votes
0
replies
691
views
Comment: Comment: RNAseq matrix containing zero values
14 months ago by Nicolas Rosewick 11k
0
votes
1
reply
662
views
Answer: Answer: How to do differential expression without having replicates
14 months ago by Nicolas Rosewick 11k
0
votes
1
reply
671
views
Answer: Answer: GIAB and GRCh38
14 months ago by Nicolas Rosewick 11k
1
vote
2
replies
1.8k
views
Comment: Comment: Error in VQSR first step
14 months ago by Nicolas Rosewick 11k
1
vote
0
replies
1.1k
views
Comment: Comment: make BED file from existing BIM and FAM files
14 months ago by Nicolas Rosewick 11k
1
vote
1
reply
641
views
Answer: Answer: Visualization of Enrichment score for spatial 10x visium samples
14 months ago by Nicolas Rosewick 11k
2
votes
1
reply
679
views
Answer: Answer: Is it possible to do bedtools multicov across the entire genome?
14 months ago by Nicolas Rosewick 11k
2
votes
1
reply
1.3k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
15 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Comment: Comment: IGV coverage bar has color, but no mutation?
15 months ago by Nicolas Rosewick 11k
1
vote
1
reply
2.6k
views
Comment: Comment: How to increase the speed of miRanda target prediction program?
15 months ago by Nicolas Rosewick 11k
0
votes
0
replies
797
views
Job: Postdoctoral fellow in bioinformatics - ULB (Belgium)
Belgium
updated 16 months ago by 43k • written 16 months ago by 11k
2
votes
0
replies
1.2k
views
Comment: Comment: parallel for 10000 whole exome data
16 months ago by Nicolas Rosewick 11k
0
votes
0
replies
1.3k
views
Comment: Comment: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.3k
views
Answer: Answer: Discrepancy between genotype and reference genome build - issue with strand flip
18 months ago by Nicolas Rosewick 11k
4
votes
0
replies
507
views
Answer: Answer: pvalue vs adjust p-value
18 months ago by Nicolas Rosewick 11k
0
votes
1
reply
729
views
Comment: Comment: What is the best way to pre-process RNA-Seq data?
19 months ago by Nicolas Rosewick 11k
0
votes
1
reply
1.5k
views
Answer: Answer: Batch effect correction of RNAseq data using scRNAseq batch effect correction to
19 months ago by Nicolas Rosewick 11k
5
votes
4
replies
3.6k
views
hg19 interval list
gatk genome interval hg19
updated 23 months ago by 4.2k • written 5.0 years ago by 11k
0
votes
1
reply
532
views
Comment: Comment: Mutations in contiguous sites within a sample
24 months ago by Nicolas Rosewick 11k
1
vote
1
reply
1.0k
views
Comment: Comment: Query hg37 rsid information
2.0 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.1k
views
Comment: Comment: sc/sn RNASeq
2.1 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.1k
views
Comment: Comment: sc/sn RNASeq
2.1 years ago by Nicolas Rosewick 11k
0
votes
1
reply
965
views
Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
2.2 years ago by Nicolas Rosewick 11k
0
votes
0
replies
679
views
Comment: Comment: Reads mapping
2.2 years ago by Nicolas Rosewick 11k
1
vote
0
replies
465
views
GWAS : normalization of continuous phenotype across different cohorts
gwas normalization
2.2 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.6k
views
Comment: Comment: Inflated p-values in QQ-plot
2.2 years ago by Nicolas Rosewick 11k
0
votes
6
replies
2.1k
views
plink : Batch effect issues after merge of two datasets
plink merge
updated 2.3 years ago by • 0 • written 3.1 years ago by 11k
1
vote
0
replies
63k
views
Comment: Comment: Insert Size And Fragment Size ?
2.5 years ago by Nicolas Rosewick 11k
1
vote
0
replies
2.9k
views
Comment: Comment: DESeq2 normalization - Found Difference in values when calculated manually
2.6 years ago by Nicolas Rosewick 11k
0
votes
1
reply
1.5k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.7 years ago by Nicolas Rosewick 11k
2
votes
7
replies
6.4k
views
6 follow
GATK genomicsDBimport intervals for WGS
gatk genomicsdbimport
updated 2.8 years ago by ▴ 270 • written 5.1 years ago by 11k
1,078 results • Page 1 of 22
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6