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5
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4
replies
2.1k
views
Tool: pyncls not dead! The datastructure nested containment list (faster than intervaltrees) revived
nested-containment-list python
updated 2.4 years ago by 45k • written 7.5 years ago by ▴ 980
1
vote
0
replies
2.1k
views
Comment: C: pyncls not dead! The datastructure nested containment list (100x > faster than i
7.5 years ago by endrebak ▴ 980
0
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0
replies
1.4k
views
Comment: C: Does anyone have a working version of the nested containment list for Python?
7.5 years ago by endrebak ▴ 980
0
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1
reply
1.4k
views
Comment: C: Does anyone have a working version of the nested containment list for Python?
7.5 years ago by endrebak ▴ 980
0
votes
1
reply
1.4k
views
Comment: C: Does anyone have a working version of the nested containment list for Python?
7.5 years ago by endrebak ▴ 980
1
vote
4
replies
1.4k
views
Does anyone have a working version of the nested containment list for Python?
nested containment list python
7.5 years ago by endrebak ▴ 980
3
votes
1
reply
8.9k
views
Tool: New ultrafast interval tree implementation for Python: kerneltree
Interval-tree Python
updated 2.4 years ago by 45k • written 7.5 years ago by ▴ 980
0
votes
0
replies
44k
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Comment: C: What Is The Quickest Algorithm For Range Overlap?
7.5 years ago by endrebak ▴ 980
0
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1
reply
2.2k
views
Comment: C: Dataset request: RNA-seq experiment that uses both single and paired end data wi
7.7 years ago by endrebak ▴ 980
0
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0
replies
2.2k
views
Comment: C: Dataset request: RNA-seq experiment that uses both single and paired end data wi
7.7 years ago by endrebak ▴ 980
4
votes
4
replies
2.2k
views
Dataset request: RNA-seq experiment that uses both single and paired end data with multiple experimental conditions
RNA-Seq sequencing
updated 7.7 years ago by 9.0k • written 7.7 years ago by ▴ 980
0
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0
replies
50k
views
Comment: C: Snakemake vs. Nextflow: strengths and weaknesses
7.8 years ago by endrebak ▴ 980
13
votes
5
replies
7.3k
views
Is bcf just a bgzipped vcf?
bcf vcf
updated 3.7 years ago by 166k • written 8.1 years ago by ▴ 980
0
votes
0
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2.4k
views
Comment: C: How do I get a list of all species with a fasta genome in UCSC?
8.3 years ago by endrebak ▴ 980
0
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1
reply
5.0k
views
Comment: C: generate fastq with bed file
8.5 years ago by endrebak ▴ 980
0
votes
0
replies
10k
views
Comment: C: How Do We Discourage Ad-Hoc Bioinformatic Analyses?
8.6 years ago by endrebak ▴ 980
1
vote
0
replies
73k
views
Comment: C: How To Convert Gencode Gtf Into Bed Format ?
8.9 years ago by endrebak ▴ 980
14
votes
2
replies
73k
views
Answer: A: How To Convert Gencode Gtf Into Bed Format ?
8.9 years ago by endrebak ▴ 980
7
votes
4
replies
2.6k
views
Different mappability/effective genome fraction with paired end reads? (ChIP-Seq)
ChIP-Seq
updated 9.0 years ago by 20 • written 9.6 years ago by ▴ 980
0
votes
0
replies
5.4k
views
Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
9.1 years ago by endrebak ▴ 980
0
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3
replies
5.4k
views
Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
9.1 years ago by endrebak ▴ 980
0
votes
1
reply
5.4k
views
Comment: C: epic: new ChIP-Seq caller based on the SICER algorithm
9.1 years ago by endrebak ▴ 980
0
votes
0
replies
6.5k
views
Comment: C: Create bigwigs in python?
9.1 years ago by endrebak ▴ 980
0
votes
1
reply
6.5k
views
Comment: C: Create bigwigs in python?
9.1 years ago by endrebak ▴ 980
22
votes
17
replies
5.4k
views
Tool: epic: new ChIP-Seq caller based on the SICER algorithm
ChIP-Seq
updated 2.3 years ago by 45k • written 9.6 years ago by ▴ 980
0
votes
0
replies
63k
views
Answer: A: How To Write Data In A Granges Object To A Bed File.
9.1 years ago by endrebak ▴ 980
0
votes
1
reply
6.0k
views
Answer: A: What is the difference between MACS version 1.4 and 2.0?
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
3.4k
views
Comment: C: Are there services/java libs I can use to upload files automatically for UCSC di
9.2 years ago by endrebak ▴ 980
0
votes
1
reply
3.4k
views
Comment: C: Are there services/java libs I can use to upload files automatically for UCSC di
9.2 years ago by endrebak ▴ 980
4
votes
8
replies
3.4k
views
Are there services/java libs I can use to upload files automatically for UCSC display?
java ucsc genome browser
updated 9.2 years ago by 5.0k • written 9.2 years ago by ▴ 980
0
votes
1
reply
3.4k
views
Comment: C: Are there services/java libs I can use to upload files automatically for UCSC di
9.2 years ago by endrebak ▴ 980
2
votes
0
replies
3.0k
views
Answer: A: Given a link that displays genome browser data, how do I download a pdf using a
9.2 years ago by endrebak ▴ 980
5
votes
6
replies
3.0k
views
Given a link that displays genome browser data, how do I download a pdf using a link?
genome browser
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
3.0k
views
Comment: C: Given a link that displays genome browser data, how do I download a pdf using a
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
3.0k
views
Comment: C: Given a link that displays genome browser data, how do I download a pdf using a
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
3.0k
views
Comment: C: Given a link that displays genome browser data, how do I download a pdf using a
9.2 years ago by endrebak ▴ 980
0
votes
1
reply
3.4k
views
Comment: C: ChIP-Seq: When reducing paired end reads to one coordinate, should I use the mid
9.2 years ago by endrebak ▴ 980
16
votes
6
replies
3.4k
views
ChIP-Seq: When reducing paired end reads to one coordinate, should I use the midpoint?
ChIP-Seq epic SICER
updated 9.2 years ago by ▴ 460 • written 9.2 years ago by ▴ 980
2
votes
0
replies
3.4k
views
Answer: A: ChIP-Seq: When reducing paired end reads to one coordinate, should I use the mid
9.2 years ago by endrebak ▴ 980
1
vote
1
reply
4.2k
views
Comment: C: I want to store a docker image reproducing a paper. Is there a host for docker i
9.2 years ago by endrebak ▴ 980
31
votes
21
replies
4.2k
views
7 follow
I want to store a docker image reproducing a paper. Is there a host for docker images of studies?
docker reproducible
updated 9.2 years ago by 28k • written 9.2 years ago by ▴ 980
0
votes
2
replies
4.2k
views
Comment: C: I want to store a docker image reproducing a paper. Is there a host for docker i
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
21k
views
Answer: A: Is There A Faster Replacement For Fastq-Dump (From The Sra-Toolkit)?
9.2 years ago by endrebak ▴ 980
0
votes
0
replies
7.1k
views
Comment: C: ASCIIGenome: Text Only Genome Viewer!
9.2 years ago by endrebak ▴ 980
1
vote
1
reply
7.1k
views
Answer: A: ASCIIGenome: Text Only Genome Viewer!
9.3 years ago by endrebak ▴ 980
0
votes
0
replies
3.8k
views
Comment: C: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
9.4 years ago by endrebak ▴ 980
1
vote
1
reply
3.8k
views
Comment: C: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
9.4 years ago by endrebak ▴ 980
0
votes
1
reply
3.8k
views
Comment: C: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
9.4 years ago by endrebak ▴ 980
1
vote
1
reply
3.8k
views
Comment: C: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
9.4 years ago by endrebak ▴ 980
2
votes
1
reply
3.8k
views
Comment: C: Fast datastructure to get counts of overlapping reads per nucleotide (!) in Pyth
9.4 years ago by endrebak ▴ 980
133 results • Page 2 of 3
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