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questions
14
votes
21
replies
10k
views
7 follow
HOMER annotatePeaks.pl problem
RNA-Seq
ChIP-Seq
HOMER
updated 10 months ago by
Ram
43k • written 6.6 years ago by
Seq225
▴ 110
10
votes
20
replies
1.7k
views
Loop in R script
R
assembly
software error
genome
updated 3.8 years ago by
bioinformatics2020
▴ 820 • written 3.8 years ago by
Seq225
▴ 110
6
votes
5
replies
1.6k
views
How to copy one column from many files to a new file?
sequence
genome
assembly
updated 3.0 years ago by
bioinformatics2020
▴ 820 • written 3.8 years ago by
Seq225
▴ 110
7
votes
9
replies
1.9k
views
Mapping fasta/fastq reads against a long fasta sequence using grep
sequence
R
alignment
assembly
genome
3.9 years ago by
Seq225
▴ 110
1
vote
5
replies
1.9k
views
How to detect and remove bacterial sequences in assembled eukaryote genome
Assembly
sequencing
SNP
genome
gene
updated 4.0 years ago by
N15
▴ 160 • written 4.0 years ago by
Seq225
▴ 110
4
votes
2
replies
1.3k
views
Meaningful DE using rpkm values in a RNA-Seq analysis
RNA-Seq
R
ChIP-Seq
sequencing
assembly
updated 4.7 years ago by
c.chakraborty
▴ 170 • written 4.7 years ago by
Seq225
▴ 110
5
votes
6
replies
2.3k
views
How to do simple pathway analysis?
rna-seq
genome
gene
updated 5 months ago by
he1k
• 0 • written 5.0 years ago by
Seq225
▴ 110
5
votes
2
replies
1.1k
views
Do blastx and blastp calculate score differently?
gene
genome
sequencing
assembly
rna-seq
updated 5.2 years ago by
Biostar
20 • written 5.3 years ago by
Seq225
▴ 110
0
votes
1
reply
2.7k
views
Should I remove GAPs from alignment before making phylogenetic tree?
alignment
genome
gene
next-gen
RNA-Seq
5.2 years ago by
Seq225
▴ 110
11
votes
18
replies
3.9k
views
How to explain the blastx output?
alignment
Assembly
rna-seq
gene
genome
updated 5.3 years ago by
lieven.sterck
15k • written 5.3 years ago by
Seq225
▴ 110
2
votes
2
replies
934
views
Filtering .dat UniProt file
gene
sequence
Assembly
genome
alignment
5.3 years ago by
Seq225
▴ 110
4
votes
8
replies
1.5k
views
Protist in UniProt/NCBI taxonomic tree
gene
genome
alignment
assembly
5.3 years ago by
Seq225
▴ 110
4
votes
7
replies
1.7k
views
How to download the .dat file of the UniProt Metazoa?
gene
genome
alignment
Assembly
sequence
updated 5.3 years ago by
vkkodali_ncbi
★ 3.7k • written 5.3 years ago by
Seq225
▴ 110
5
votes
6
replies
2.9k
views
Problem mapping mRNA seq data using STAR.
RNA-Seq
assembly
alignment
updated 5.5 years ago by
Biostar
20 • written 5.6 years ago by
Seq225
▴ 110
1
vote
4
replies
2.1k
views
Which metagenomics tool works best?
alignment
genome
sequencing
assembly
metagenomics
5.5 years ago by
Seq225
▴ 110
0
votes
6
replies
5.0k
views
Very low mapping rate of mRNA seq data
RNA-Seq
sequencing
genome
assembly
5.6 years ago by
Seq225
▴ 110
0
votes
3
replies
1.8k
views
OrthoMCL problem when connecting with mysql
genome
gene
software error
updated 5.6 years ago by
Biostar
20 • written 5.8 years ago by
Seq225
▴ 110
4
votes
12
replies
1.5k
views
Could someone explain this perl command?
bash
perl
5.7 years ago by
Seq225
▴ 110
2
votes
4
replies
1.5k
views
What pipeline should I use to assemble bacterial genome?
sequencing
assembly
genome
alignment
5.7 years ago by
Seq225
▴ 110
0
votes
6
replies
809
views
mysql-8.0.11 parameter for mysql 5.1.7
gene
Assembly
genome
updated 5.8 years ago by
GenoMax
142k • written 5.8 years ago by
Seq225
▴ 110
0
votes
1
reply
3.0k
views
bedtools multicov problem
RNA-Seq
next-gen
sequence
6.6 years ago by
Seq225
▴ 110
0
votes
6
replies
1.3k
views
How to separate small RNA reads that show 10nt overlap?
RNA-Seq
sequencing
alignment
6.8 years ago by
Seq225
▴ 110
1
vote
4
replies
3.4k
views
Bismark Methyl-Seq Analysis
bisulfite sequencing
bismark
methyl-seq
Illumina
updated 6.8 years ago by
mark.ziemann
★ 1.9k • written 6.9 years ago by
Seq225
▴ 110
8
votes
3
replies
2.7k
views
De Novo Assembly of small RNA Reads (Illumina)
RNA-Seq
Assembly
genome
7.9 years ago by
Seq225
▴ 110
24 results • Page
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