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6
votes
5
replies
4.8k
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Differential expression analysis tool for single cell RNA-seq data
single-cell RNA-seq DE analysis RNA-Seq
updated 2.5 years ago by ▴ 130 • written 7.9 years ago by ▴ 90
2
votes
2
replies
6.8k
views
Trimmomatic: How to improve FastQC report by adjusting the thresholds in running Trimmomatic?
RNA-Seq Trimmomatic FastQC
updated 6.0 years ago by ▴ 10 • written 9.2 years ago by ▴ 90
0
votes
1
reply
4.9k
views
Comment: C: RNA-seq long reads vs. transcripts
7.6 years ago by tunl ▴ 90
0
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0
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4.9k
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Comment: C: RNA-seq long reads vs. transcripts
7.6 years ago by tunl ▴ 90
0
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1
reply
4.9k
views
Comment: C: RNA-seq long reads vs. transcripts
7.6 years ago by tunl ▴ 90
6
votes
7
replies
4.9k
views
RNA-seq long reads vs. transcripts
RNA-Seq long reads assembly
7.6 years ago by tunl ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: A question about differential expression analysis
7.9 years ago by tunl ▴ 90
3
votes
5
replies
2.1k
views
A question about differential expression analysis
RNA-Seq single-cell RNA-seq DE analysis
updated 7.9 years ago by 105k • written 7.9 years ago by ▴ 90
0
votes
0
replies
4.8k
views
Comment: C: Differential expression analysis tool for single cell RNA-seq data
7.9 years ago by tunl ▴ 90
0
votes
0
replies
4.8k
views
Comment: C: Differential expression analysis tool for single cell RNA-seq data
7.9 years ago by tunl ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: Length distribution of PacBio RNA-seq
8.0 years ago by tunl ▴ 90
4
votes
7
replies
2.1k
views
Length distribution of PacBio RNA-seq
RNA-Seq PacBio long reads
8.0 years ago by tunl ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Length distribution of PacBio RNA-seq
8.0 years ago by tunl ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: Length distribution of PacBio RNA-seq
8.0 years ago by tunl ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
5
votes
10
replies
2.9k
views
Question about downloading RNA-seq long reads and short reads for the same sample
RNA-Seq long reads PacBio
updated 8.0 years ago by ▴ 70 • written 8.0 years ago by ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Question about downloading RNA-seq long reads and short reads for the same sampl
8.0 years ago by tunl ▴ 90
4
votes
7
replies
3.2k
views
What determines which tests are performed in Cuffdiff? Only two types of tests were performed in our Cuffdiff run
RNA-Seq Cuffdiff
updated 8.0 years ago by 20 • written 9.1 years ago by ▴ 90
0
votes
1
reply
5.2k
views
Comment: C: Question about some features in Cytoscape.js (or D3.js)
8.6 years ago by tunl ▴ 90
0
votes
1
reply
5.2k
views
Comment: C: Question about some features in Cytoscape.js (or D3.js)
8.6 years ago by tunl ▴ 90
0
votes
1
reply
5.2k
views
Comment: C: Question about some features in Cytoscape.js (or D3.js)
8.6 years ago by tunl ▴ 90
6
votes
10
replies
5.2k
views
Question about some features in Cytoscape.js (or D3.js)
Cytoscape.js D3.js network visualization
updated 8.6 years ago by 36k • written 8.6 years ago by ▴ 90
0
votes
1
reply
5.2k
views
Comment: C: Question about some features in Cytoscape.js (or D3.js)
8.6 years ago by tunl ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: What exactly one "library" corresponds to in RNA-seq analysis
8.6 years ago by tunl ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: What exactly one "library" corresponds to in RNA-seq analysis
8.6 years ago by tunl ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: What tools are better than Cuffdiff for differential expression analysis
8.6 years ago by tunl ▴ 90
4
votes
3
replies
2.6k
views
What tools are better than Cuffdiff for differential expression analysis
RNA-Seq differential expression analysis Cuffdiff
8.6 years ago by tunl ▴ 90
3
votes
5
replies
2.6k
views
What exactly one "library" corresponds to in RNA-seq analysis
RNA-Seq
8.6 years ago by tunl ▴ 90
1
vote
1
reply
2.9k
views
Cuffdiff hangs at "Inspecting maps and determining fragment length distributions" step
RNA-Seq Cuffdiff
updated 9.0 years ago by 20 • written 9.1 years ago by ▴ 90
0
votes
0
replies
2.7k
views
Comment: C: lncRNA gene vs. lncRNA isoform
9.1 years ago by tunl ▴ 90
7
votes
3
replies
2.7k
views
lncRNA gene vs. lncRNA isoform
RNA-Seq lncRNA isoforms transcripts GENCODE
updated 9.1 years ago by ★ 1.6k • written 9.1 years ago by ▴ 90
0
votes
0
replies
3.2k
views
Comment: C: What determines which tests are performed in Cuffdiff? Only two types of tests w
9.1 years ago by tunl ▴ 90
0
votes
1
reply
3.2k
views
Comment: C: What determines which tests are performed in Cuffdiff? Only two types of tests w
9.1 years ago by tunl ▴ 90
0
votes
1
reply
3.2k
views
Comment: C: What determines which tests are performed in Cuffdiff? Only two types of tests w
9.1 years ago by tunl ▴ 90
0
votes
0
replies
2.3k
views
How important is --frag-bias-correct in running Cuffdiff (it makes Cuffdiff very slow in our case)?
RNA-Seq Cuffdiff
9.1 years ago by tunl ▴ 90
0
votes
0
replies
1.8k
views
What original Cuffdiff steps does Cuffquant cover?
RNA-Seq Cuffquant Cuffdiff
9.1 years ago by tunl ▴ 90
0
votes
1
reply
4.3k
views
Comment: C: Is there any fixed limit on the number of threads in running Tophat?
9.1 years ago by tunl ▴ 90
0
votes
1
reply
4.3k
views
Comment: C: Is there any fixed limit on the number of threads in running Tophat?
9.1 years ago by tunl ▴ 90
0
votes
1
reply
4.3k
views
Comment: C: Is there any fixed limit on the number of threads in running Tophat?
9.1 years ago by tunl ▴ 90
6
votes
10
replies
4.3k
views
Is there any fixed limit on the number of threads in running Tophat?
RNA-Seq Tophat
updated 9.1 years ago by ★ 2.1k • written 9.1 years ago by ▴ 90
0
votes
0
replies
4.5k
views
Comment: C: Trimmomatic: Does it matter to trim the fastq before or after merging multiple r
9.2 years ago by tunl ▴ 90
6
votes
3
replies
4.5k
views
Trimmomatic: Does it matter to trim the fastq before or after merging multiple replicates?
RNA-Seq Trimmomatic
updated 9.2 years ago by 48k • written 9.2 years ago by ▴ 90
0
votes
0
replies
3.9k
views
Comment: C: Read pairing issues detected in Tophat run
9.2 years ago by tunl ▴ 90
1
vote
1
reply
2.6k
views
FastQC report: should we not use the fastq data for Tophat+Cuffdiff if any of its modules is marked as "red cross"?
RNA-Seq FastQC Tophat Cuffdiff
9.2 years ago by tunl ▴ 90
0
votes
0
replies
6.2k
views
Comment: C: Cuffdiff takes extremely long time at "Testing for differential expression and r
9.2 years ago by tunl ▴ 90
0
votes
1
reply
3.9k
views
Comment: C: Read pairing issues detected in Tophat run
9.2 years ago by tunl ▴ 90
71 results • Page 1 of 2
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