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2
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0
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3.4k
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Answer: Answer: base modifications tags in SAM file
15 months ago by colindaven 7.9k
1
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1
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1.4k
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Answer: Answer: Genome indexing error
2.4 years ago by colindaven 7.9k
1
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1
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1.5k
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Comment: Comment: Is it possible to get a gene sequence by genome re-sequecing?
2.4 years ago by colindaven 7.9k
1
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1
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1.5k
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Answer: Answer: Is it possible to get a gene sequence by genome re-sequecing?
2.4 years ago by colindaven 7.9k
1
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1
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1.9k
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Answer: Answer: Nextflow process for samtools sort and variant calling
2.4 years ago by colindaven 7.9k
0
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0
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1.1k
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Answer: Answer: How to map genomic sequence to protein functions or domains?
2.4 years ago by colindaven 7.9k
0
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1.4k
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Answer: Answer: Why does Guppy output different sequence data (same model)?
2.4 years ago by colindaven 7.9k
0
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0
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10k
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Answer: Answer: ANI calculation: alternatives to Jspecies
2.4 years ago by colindaven 7.9k
1
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0
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6.5k
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Answer: Answer: Guppy basecaller
2.4 years ago by colindaven 7.9k
1
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0
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1.9k
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Comment: Comment: No Replicate RNA-Seq (But still biological replicates)
2.4 years ago by colindaven 7.9k
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0
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1.1k
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Answer: Answer: how to choose an efficient filtering threshold to remove shorter and low quality
2.4 years ago by colindaven 7.9k
0
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0
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1.5k
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Answer: Answer: How do you find two genes exclusively expressed in a given tissue / cell type?
2.5 years ago by colindaven 7.9k
0
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0
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767
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Comment: Comment: Phasing softwares
2.5 years ago by colindaven 7.9k
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0
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1.0k
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Comment: Comment: How to predict the mature miRNA from its precursor
2.5 years ago by colindaven 7.9k
0
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1
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1.0k
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Answer: Answer: How to predict the mature miRNA from its precursor
2.5 years ago by colindaven 7.9k
0
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0
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1.5k
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Comment: Comment: What Pacbio HiFi data do people save ?
2.5 years ago by colindaven 7.9k
2
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3
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1.5k
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What Pacbio HiFi data do people save ?
fastq pacbio HiFi
updated 2.5 years ago by 45k • written 2.5 years ago by 7.9k
1
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1
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1.5k
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Answer: Answer: What Pacbio HiFi data do people save ?
2.5 years ago by colindaven 7.9k
0
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0
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1.9k
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Comment: Comment: how can i filter a sam file from a paf file
2.5 years ago by colindaven 7.9k
0
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0
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1.0k
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Answer: Answer: how can we improve genome assembly levels ? from contig to complete using bioinf
2.5 years ago by colindaven 7.9k
0
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0
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1.6k
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Answer: Answer: STAR solo set parameters for scrna-seq
2.5 years ago by colindaven 7.9k
0
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0
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2.3k
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Comment: Comment: Best way to visualize .paf or .sam alignment to a fasta file
2.5 years ago by colindaven 7.9k
2
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1
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1.0k
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Answer: Answer: Variant caller reports a homozygous variant genotype, but more reads are associa
2.5 years ago by colindaven 7.9k
1
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0
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3.2k
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Answer: Answer: What's the correct way to map to hg38 with alternative contigs?
2.5 years ago by colindaven 7.9k
6
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0
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2.5k
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Comment: Comment: Run nextflow sections sequentially
2.5 years ago by colindaven 7.9k
2
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0
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976
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Answer: Answer: Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for
2.5 years ago by colindaven 7.9k
1
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0
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7.3k
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Comment: Comment: Snakemake vs Nextflow Upcoming bioinformatics Project
2.5 years ago by colindaven 7.9k
0
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0
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2.0k
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Comment: Comment: My fastq files(paired end) have different read number
2.5 years ago by colindaven 7.9k
1
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0
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3.1k
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Comment: Comment: Nextflow: No space left on device, process using output directory as input?
2.5 years ago by colindaven 7.9k
0
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1
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1.4k
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Answer: Answer: SRA Data Download
2.5 years ago by colindaven 7.9k
0
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0
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1.5k
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Answer: Answer: Very high coverage Nanopore alignment Hg38
2.5 years ago by colindaven 7.9k
2
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0
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1.0k
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Comment: Comment: align reads to a custom reference genome
2.5 years ago by colindaven 7.9k
1
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0
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2.2k
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Comment: Comment: How do you download from CyVerse using FTP or wget?
2.5 years ago by colindaven 7.9k
4
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1
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1.4k
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 2.6 years ago by 153k • written 2.6 years ago by 7.9k
2
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1
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2.4k
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Answer: Answer: Nextflow workflow errors when run from Scratch dir?
2.6 years ago by colindaven 7.9k
0
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0
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1.3k
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Answer: Answer: Pangenome: Gene presence and absence analysis
2.6 years ago by colindaven 7.9k
0
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0
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2.5k
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Comment: Comment: Converting gam to gaf
2.6 years ago by colindaven 7.9k
0
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0
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2.5k
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Comment: Comment: passing a third-party GFA to vg tools
2.6 years ago by colindaven 7.9k
0
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0
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4.5k
views
Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
2.6 years ago by colindaven 7.9k
0
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0
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1.2k
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Answer: Answer: High-resolution annotation of LTR elements
2.6 years ago by colindaven 7.9k
0
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1
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4.5k
views
Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
2.6 years ago by colindaven 7.9k
1
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1
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4.9k
views
Comment: Comment: Nextflow Singularity/Apptainer error: command not found
2.6 years ago by colindaven 7.9k
0
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1
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4.5k
views
Comment: Comment: vg augment/call - Excessively high memory usage for some chromosomes
2.6 years ago by colindaven 7.9k
0
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2
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4.5k
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Comment: Comment: vg call - Excessively high memory usage for some chromosomes
2.6 years ago by colindaven 7.9k
0
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1
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926
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Answer: Answer: low featurecounts assignment rate despite of good mapping with STAR
2.6 years ago by colindaven 7.9k
0
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0
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5.5k
views
Answer: Answer: Using LiftOver to change genomic build
2.6 years ago by colindaven 7.9k
0
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1
reply
13k
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Answer: Answer: making a BIGWIG from BAM file
2.6 years ago by colindaven 7.9k
0
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1
reply
1.8k
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Answer: Answer: MissAssembly Correction
2.6 years ago by colindaven 7.9k
0
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1
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1.5k
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Answer: Answer: Bowtie2 which reference is best ?
2.6 years ago by colindaven 7.9k
0
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0
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1.4k
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Answer: Answer: How to convert a .gbk or .faa to .pep as well a .gbk or .gff to .bed?
2.6 years ago by colindaven 7.9k
1,105 results • Page 8 of 23
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